Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01909 ATGAAGAAGATTCTTAAGAAGCTTAATATCATGTCTAACAAATCAGAAAATGCACAAGGGTCTTATTCTAAGAGGTTTGTGAGTTCTAGTTGGTTGCATTCAGTTGCTAATAGAAAGAGTCTTAGTTCTACATCTTTGAACCAAGGAAAATTTGAGAGGATGGAACCATCTGACACAGTGAGAAGTGTTGATTTGGATGTTGTTTCGGATTCAGATAGGCGTGATTCGGGTTATCGTGCAACTGCTTCTAGGGATCCTAAAGTGGAGGAAGAAGAGTATCAATTACAACTGGCTTTGGAGATGAGTGCAAAGGAGGATCCTGAAGCTGTGCAGATTGAGGCTGTTAAGGAAATTAGTTTAGGGTCTTGTGCTCCTAATGATACACCAGCTGAAATTTTGGCATACAGATACTGGAATTACAATGCTCTTGGTTATGACGACAAAGTCATGGATGGATTCTATGATCTATATGGGATCTTAACTGAGTCAAACACTGCAACGATGCCTTCCCTTATAGATCTGCAAGGAAGATCAATCTCAGGTAATGTCACATGGGAAGCTGTATTAGTCAATAGGGCTGCTGATTCTAATTTGTTGAAACTTGAGCAGAAAGCCCTCGAGCTTACCGTCAAATCGAGAAGTGATTCTGAAGTTGTTAAAGATATCGATTTGGTTCGCAAGCTTGCATTATTTGTGGCTGATTATATGGGTGGACCTGTTGGAAATCCTGAAAGCATGTCAAAAGCATGGAGAAGTCTTAGTTACAGTCTGCAATCAACTCTTGGTAGCATGATTTTGCCACTCGGTTCTTTGACTATTGGATTAGCTCGGCATCGAGCATTGTTATTTAAGGTTCTAGCTGATAGTTTGAGCATTCCATCACGGTTGGTGAAAGGAAAGCAATATACAGGTTCTGATGATGCAGCAATTAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGATCTAATGGCAGATCCCGGAACTCTTATTCCATCGGATGCTACTGGATCATGTATTGAGTACGATGAATCATTTTTTGCGGCAAGTTCTTCATCAAGAGACCTCGATTCATCTCGTGTAGCATCATATAGCAGTGGAGTTGGAAGTTCATCGGAAGAAACTTCAGATTTTGGGATGTCAAACATAGAAAACAGATCAAAACAACATAATGTCAAGAAGATCGTAGAGCAGGAAGCTCAAGGAAGACCTAATCATCGATATGTTCATGCAAGATCATCTTCTTGGAGTGAAGGGATTAGTTCCTCCGTAGCAATCAGAATGAAAGCCAAAAAGGTTTCTCAATTTATGATTGATACTGCCAAGGAAAACCCTCACTTAGCTCAGAAGCTTCATGATGTTTTACTTGAAAGTGGTGTTGTTCCTCCGCCAAATTTATTTTCTGACAATTATCACGAGGAATTTGTTTCCTCAACTGAAGAGAAAAATGTACAAAAACAAGGAAGTGAACATCAAGAAGTGGAATTTGATGATAATCTCGGTCCTTCTATGCCTGTAGAAGGTTTAGGAACTAACCTTCCTCTTCACACTCAGGTAAAATATGGGAGAAAGGTGCCAGTTTCTGCAGCAGCAGCTGCAGCGGCTGCGGTTGTTGCATCTTCTATGGTAGTTGCTGCAGTGAGGTCAAACACTGATTCCAACATCGAGCTTTCAGTCTCGGCTGCTGCTGCCGCTACCGCTGCAGCTGTAGTAGCAACCACTTCTGCAGTGAGTATGTATGAACATAGCAGTCGAAGTGATGGGGATACCGAAAGTTCTGGAACAAATTTTGAAGTCGAGAGAAGATCTGGTAGCTCAGTTGTAAGTAATGACAGTATAAAATCTGATTGTTCTTCTCTAGACGATGTTGCTGAGCATGAAATACATTGGGAGGAAATCACACTTGGGGAACGTATTGGACTCGGATCTTATGGGGAGGTGTATCGTGGTGAATGGCGAGGAACTGAAGTTGCTGTAAAGAGATTTCTAAATCAAGATATATCCGGTGAAGCACTTGAAGAATTCATAAGTGAGGTCAGAATAATGAAAAGGTTGAGGCATCCAAATGTGGTTCTCTTCATGGGAGCAGTAATTCGATTTCCAAATCTTTCAATTGTTACTGAATTTCTTCCGAGAGGAAGTTTGTATAGATTAATTCATCGGCCGAACAATCAATTAGACGAGCGAAGGCTTTTGAGAATGGCCCTTGATACTGCTCGAGGAATGAACTATTTGCACAACTGCAGTCCGGTGATAGTGCATCGGGATTTGAAGTCTCCAAATCTTCTTGTTGATAAAAATTGGGTTGTAAAGGTATGTGATTTTGGCTTATCGCGTATGAAGCATAGCACATTCCTTTCTTCAAGATCAACTGCAGGAACGGCCGAGTGGATGGCTCCCGAAATGTTGAGAAATGAACCGTCAAATGAAAAGTGTGATGTTTATAGCTTTGGGATCATATTATGGGAGCTGTTTACTTTGCAGCAACCTTGGAGAGGAATGAATTCAATGCAAGTTGTCGGTGCAGTGGGTTTTCAACATCGCCGTCTTGACATTCCTGATGACATGAGTCCTGCCATTGCAGATATTGTCAGGAGATGCTGGCAGACAGATTCAAAGTTGAGACCTACATTTGCTGAAATATTGGCAGCTCTAAAGCCGTTACAGAAACCAATTGTCGGTTCTCAAGTGCCTCGACCAGTTGCGTCAGGTAGGCACGGGAAGGTTCAATCATCAGCTGCAGAAAGATAG 2757 0.4153 MKKILKKLNIMSNKSENAQGSYSKRFVSSSWLHSVANRKSLSSTSLNQGKFERMEPSDTVRSVDLDVVSDSDRRDSGYRATASRDPKVEEEEYQLQLALEMSAKEDPEAVQIEAVKEISLGSCAPNDTPAEILAYRYWNYNALGYDDKVMDGFYDLYGILTESNTATMPSLIDLQGRSISGNVTWEAVLVNRAADSNLLKLEQKALELTVKSRSDSEVVKDIDLVRKLALFVADYMGGPVGNPESMSKAWRSLSYSLQSTLGSMILPLGSLTIGLARHRALLFKVLADSLSIPSRLVKGKQYTGSDDAAINFVKIDDGREYIVDLMADPGTLIPSDATGSCIEYDESFFAASSSSRDLDSSRVASYSSGVGSSSEETSDFGMSNIENRSKQHNVKKIVEQEAQGRPNHRYVHARSSSWSEGISSSVAIRMKAKKVSQFMIDTAKENPHLAQKLHDVLLESGVVPPPNLFSDNYHEEFVSSTEEKNVQKQGSEHQEVEFDDNLGPSMPVEGLGTNLPLHTQVKYGRKVPVSAAAAAAAAVVASSMVVAAVRSNTDSNIELSVSAAAAATAAAVVATTSAVSMYEHSSRSDGDTESSGTNFEVERRSGSSVVSNDSIKSDCSSLDDVAEHEIHWEEITLGERIGLGSYGEVYRGEWRGTEVAVKRFLNQDISGEALEEFISEVRIMKRLRHPNVVLFMGAVIRFPNLSIVTEFLPRGSLYRLIHRPNNQLDERRLLRMALDTARGMNYLHNCSPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEMLRNEPSNEKCDVYSFGIILWELFTLQQPWRGMNSMQVVGAVGFQHRRLDIPDDMSPAIADIVRRCWQTDSKLRPTFAEILAALKPLQKPIVGSQVPRPVASGRHGKVQSSAAER 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01909 918 Gene3D Phosphorylase Kinase; domain 1 628 712 - -
Trre12g01909 918 SUPERFAMILY Protein kinase-like (PK-like) 612 886 IPR011009 -
Trre12g01909 918 MobiDBLite consensus disorder prediction 581 617 - -
Trre12g01909 918 CDD STKc_MAP3K-like 641 887 - -
Trre12g01909 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Trre12g01909 918 Pfam Protein tyrosine and serine/threonine kinase 635 886 IPR001245 GO:0004672|GO:0006468
Trre12g01909 918 PRINTS Tyrosine kinase catalytic domain signature 748 766 IPR001245 GO:0004672|GO:0006468
Trre12g01909 918 PRINTS Tyrosine kinase catalytic domain signature 795 805 IPR001245 GO:0004672|GO:0006468
Trre12g01909 918 PRINTS Tyrosine kinase catalytic domain signature 858 880 IPR001245 GO:0004672|GO:0006468
Trre12g01909 918 PRINTS Tyrosine kinase catalytic domain signature 814 836 IPR001245 GO:0004672|GO:0006468
Trre12g01909 918 PRINTS Tyrosine kinase catalytic domain signature 709 722 IPR001245 GO:0004672|GO:0006468
Trre12g01909 918 SMART serkin_6 635 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01909 918 Gene3D Transferase(Phosphotransferase) domain 1 714 896 - -
Trre12g01909 918 FunFam Serine/threonine-protein kinase isoform 1 626 713 - -
Trre12g01909 918 ProSitePatterns Protein kinases ATP-binding region signature. 641 662 IPR017441 GO:0005524
Trre12g01909 918 FunFam PAS domain-containing protein tyrosine kinase family protein 713 900 - -
Trre12g01909 918 Pfam Ethylene-responsive protein kinase Le-CTR1 130 333 - -
Trre12g01909 918 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 90 109 IPR003903 -
Trre12g01909 918 ProSiteProfiles Protein kinase domain profile. 635 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01909 918 MobiDBLite consensus disorder prediction 898 918 - -
Trre12g01909 918 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 197 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01909 Trre-Chr12 19713698 19722577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01909 1 905 MAP Kinase Kinase Kinase AT1G73660 58.167 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre12g01909 PK_Tyr_Ser-Thr 4.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01909 - - psat:127107393 1391.71