Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01907 ATGGACCCATCCTCGATCTCTTCACCTCCAGCTCCGGTTCCCAACGCCGTCCCCTTCGCCGTCGAACCAAACAACCACCCTCCTCCACCACCGCTTCATCAATCTCCACCTTCAATTCATCCACCCTATGCCGAGATGATATACACAGCAATTGAAGCTTTGAAAGAGCAAAACGGTTCAAGCAAAAGAGCAATAGCGAAATACATAGAACATGTTTACAAAGACCAACTTCCACCTTCACACACAACCTTGTTGACTCATCACTTAAAGCGTTTGAAATCTGATGGCTTACTTTCTATGGTTAAAAATTCATACATAATTCCTAGATCTACACCTCCTCTTCCTTCTTCTTCACCTCCTCAACCTTCAAGACCACGTGGCAGACCCAGAAAACCCCAATCCCAACCACTTCCTCCTATTATTGTTACTAACAACAACAACAACCCGGCCCAACAACAAGCCCAAAATGCTGAACCTGTTTGGGCCGCACTTGGGCTTGCTGATGAGCCATCTGCTGCTGCAGCTGTTGTTTCTGACGGAAGTAATAAAAGAGGTCGTGGCCGTCCTAAAAAAGGTACAGGCCTAATTCCAAGCCCAAGCCCAAGCCCAAACCCAATCCCAGTACAGGCTCAAGGTGGTGCCGGTGCGGTTATTCCGCCAACACCTTCTCGAGGTAGAGGACGTCCGCCTGGGTCTAAAGCTAAATCAAAGAGGAGACCTGGACGTCCACCTAAGGTGCAACCAGAGACTACTACAGCTGCTGCTGTTGTTAGTGGTAGTGCTAAGAAAAGACCGGGGCGTCCGGCTAAGAATCAAAAGCAGAATCCGACTCCGATACCGTTTGCTGCACCTGTGTCTGAAGTGGTAGTGCCGAATACTGGAGTGGAAGGGGTTGCTGTTTTGACTCCGAGATCTAGAGGACGACCTAGAAAGAATAATTCTGCTGTTGCTGCTGTCCCTGTTGCTGTTGTTGCTCCTGCTGGGAGAGGTAGAGGACGTGGTAGAGGTCGCGGTGGTGGTGGCCGTGGAAGAGGACGCGGCGGTGTGAGTGTTACTGTTCAAGCTAGACCTGCTGGAAAAAGGCCTGTTGGTCGTCCAAAGAAGGGAACAACACCTGCTACTGCTACTGCTCCAGAAAATGCTGCTAATGAAGATCTCAGAAGGAAACTCGAACACTTTCAAGGAAGAGTCAAGGAATCTCTTGCCTTGCTTAGGCCTCATTTTAACCATGAAAGTCCGGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAATACTCGTAGCCATGGATCTTAATGAACCACTAAAGGATGAACCACTTCCACAGCAACAGAACCTGCCAGTACAAGATCAGCCACCGCCACAGCAGCCACCACCACAGCAGGTCCAACCACAGCAGGTCCCACCACAGCAGGTGCCACCGCAACATTTTCCAGCACAACAAATCGCGCATGTGCCACAGGTATTTCCGCAATATCCACCGTTTCATATTCAGGAGTTCCAATTCCAGCAGCAGCAGCAGCTATACCAACCACCACCGCCACAGCAGAACCAGTTTCATCCTTAG 1566 0.4987 MDPSSISSPPAPVPNAVPFAVEPNNHPPPPPLHQSPPSIHPPYAEMIYTAIEALKEQNGSSKRAIAKYIEHVYKDQLPPSHTTLLTHHLKRLKSDGLLSMVKNSYIIPRSTPPLPSSSPPQPSRPRGRPRKPQSQPLPPIIVTNNNNNPAQQQAQNAEPVWAALGLADEPSAAAAVVSDGSNKRGRGRPKKGTGLIPSPSPSPNPIPVQAQGGAGAVIPPTPSRGRGRPPGSKAKSKRRPGRPPKVQPETTTAAAVVSGSAKKRPGRPAKNQKQNPTPIPFAAPVSEVVVPNTGVEGVAVLTPRSRGRPRKNNSAVAAVPVAVVAPAGRGRGRGRGRGGGGRGRGRGGVSVTVQARPAGKRPVGRPKKGTTPATATAPENAANEDLRRKLEHFQGRVKESLALLRPHFNHESPVTAIAAIQELEILVAMDLNEPLKDEPLPQQQNLPVQDQPPPQQPPPQQVQPQQVPPQQVPPQHFPAQQIAHVPQVFPQYPPFHIQEFQFQQQQQLYQPPPPQQNQFHP 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01907 521 SMART AT_hook_2 237 249 IPR017956 GO:0003677
Trre12g01907 521 SMART AT_hook_2 360 372 IPR017956 GO:0003677
Trre12g01907 521 SMART AT_hook_2 223 235 IPR017956 GO:0003677
Trre12g01907 521 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Trre12g01907 521 SMART AT_hook_2 262 274 IPR017956 GO:0003677
Trre12g01907 521 SMART AT_hook_2 303 315 IPR017956 GO:0003677
Trre12g01907 521 SMART AT_hook_2 183 195 IPR017956 GO:0003677
Trre12g01907 521 FunFam Histone H1.2 36 117 - -
Trre12g01907 521 Pfam linker histone H1 and H5 family 40 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre12g01907 521 MobiDBLite consensus disorder prediction 436 485 - -
Trre12g01907 521 SMART h15plus2 37 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre12g01907 521 MobiDBLite consensus disorder prediction 1 41 - -
Trre12g01907 521 SUPERFAMILY "Winged helix" DNA-binding domain 37 112 IPR036390 -
Trre12g01907 521 MobiDBLite consensus disorder prediction 137 158 - -
Trre12g01907 521 MobiDBLite consensus disorder prediction 107 283 - -
Trre12g01907 521 MobiDBLite consensus disorder prediction 446 475 - -
Trre12g01907 521 MobiDBLite consensus disorder prediction 112 136 - -
Trre12g01907 521 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 39 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre12g01907 521 MobiDBLite consensus disorder prediction 326 385 - -
Trre12g01907 521 PANTHER HISTONE H1 24 248 - -
Trre12g01907 521 PRINTS AT-hook-like domain signature 221 232 IPR017956 GO:0003677
Trre12g01907 521 PRINTS AT-hook-like domain signature 358 368 IPR017956 GO:0003677
Trre12g01907 521 PRINTS AT-hook-like domain signature 183 193 IPR017956 GO:0003677
Trre12g01907 521 MobiDBLite consensus disorder prediction 1 38 - -
Trre12g01907 521 CDD H15 40 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre12g01907 521 Gene3D - 36 112 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01907 Trre-Chr12 19704945 19709149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01907 46 112 Single Myb Histone (SMH) Gene Family AT1G49950 46.269 1.94e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01907 - - mtr:25496745 409.838