LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g01907	ATGGACCCATCCTCGATCTCTTCACCTCCAGCTCCGGTTCCCAACGCCGTCCCCTTCGCCGTCGAACCAAACAACCACCCTCCTCCACCACCGCTTCATCAATCTCCACCTTCAATTCATCCACCCTATGCCGAGATGATATACACAGCAATTGAAGCTTTGAAAGAGCAAAACGGTTCAAGCAAAAGAGCAATAGCGAAATACATAGAACATGTTTACAAAGACCAACTTCCACCTTCACACACAACCTTGTTGACTCATCACTTAAAGCGTTTGAAATCTGATGGCTTACTTTCTATGGTTAAAAATTCATACATAATTCCTAGATCTACACCTCCTCTTCCTTCTTCTTCACCTCCTCAACCTTCAAGACCACGTGGCAGACCCAGAAAACCCCAATCCCAACCACTTCCTCCTATTATTGTTACTAACAACAACAACAACCCGGCCCAACAACAAGCCCAAAATGCTGAACCTGTTTGGGCCGCACTTGGGCTTGCTGATGAGCCATCTGCTGCTGCAGCTGTTGTTTCTGACGGAAGTAATAAAAGAGGTCGTGGCCGTCCTAAAAAAGGTACAGGCCTAATTCCAAGCCCAAGCCCAAGCCCAAACCCAATCCCAGTACAGGCTCAAGGTGGTGCCGGTGCGGTTATTCCGCCAACACCTTCTCGAGGTAGAGGACGTCCGCCTGGGTCTAAAGCTAAATCAAAGAGGAGACCTGGACGTCCACCTAAGGTGCAACCAGAGACTACTACAGCTGCTGCTGTTGTTAGTGGTAGTGCTAAGAAAAGACCGGGGCGTCCGGCTAAGAATCAAAAGCAGAATCCGACTCCGATACCGTTTGCTGCACCTGTGTCTGAAGTGGTAGTGCCGAATACTGGAGTGGAAGGGGTTGCTGTTTTGACTCCGAGATCTAGAGGACGACCTAGAAAGAATAATTCTGCTGTTGCTGCTGTCCCTGTTGCTGTTGTTGCTCCTGCTGGGAGAGGTAGAGGACGTGGTAGAGGTCGCGGTGGTGGTGGCCGTGGAAGAGGACGCGGCGGTGTGAGTGTTACTGTTCAAGCTAGACCTGCTGGAAAAAGGCCTGTTGGTCGTCCAAAGAAGGGAACAACACCTGCTACTGCTACTGCTCCAGAAAATGCTGCTAATGAAGATCTCAGAAGGAAACTCGAACACTTTCAAGGAAGAGTCAAGGAATCTCTTGCCTTGCTTAGGCCTCATTTTAACCATGAAAGTCCGGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAATACTCGTAGCCATGGATCTTAATGAACCACTAAAGGATGAACCACTTCCACAGCAACAGAACCTGCCAGTACAAGATCAGCCACCGCCACAGCAGCCACCACCACAGCAGGTCCAACCACAGCAGGTCCCACCACAGCAGGTGCCACCGCAACATTTTCCAGCACAACAAATCGCGCATGTGCCACAGGTATTTCCGCAATATCCACCGTTTCATATTCAGGAGTTCCAATTCCAGCAGCAGCAGCAGCTATACCAACCACCACCGCCACAGCAGAACCAGTTTCATCCTTAG	1566	0.4987	MDPSSISSPPAPVPNAVPFAVEPNNHPPPPPLHQSPPSIHPPYAEMIYTAIEALKEQNGSSKRAIAKYIEHVYKDQLPPSHTTLLTHHLKRLKSDGLLSMVKNSYIIPRSTPPLPSSSPPQPSRPRGRPRKPQSQPLPPIIVTNNNNNPAQQQAQNAEPVWAALGLADEPSAAAAVVSDGSNKRGRGRPKKGTGLIPSPSPSPNPIPVQAQGGAGAVIPPTPSRGRGRPPGSKAKSKRRPGRPPKVQPETTTAAAVVSGSAKKRPGRPAKNQKQNPTPIPFAAPVSEVVVPNTGVEGVAVLTPRSRGRPRKNNSAVAAVPVAVVAPAGRGRGRGRGRGGGGRGRGRGGVSVTVQARPAGKRPVGRPKKGTTPATATAPENAANEDLRRKLEHFQGRVKESLALLRPHFNHESPVTAIAAIQELEILVAMDLNEPLKDEPLPQQQNLPVQDQPPPQQPPPQQVQPQQVPPQQVPPQHFPAQQIAHVPQVFPQYPPFHIQEFQFQQQQQLYQPPPPQQNQFHP	521

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g01907	521	SMART	AT_hook_2	237	249	IPR017956	GO:0003677
	Trre12g01907	521	SMART	AT_hook_2	360	372	IPR017956	GO:0003677
	Trre12g01907	521	SMART	AT_hook_2	223	235	IPR017956	GO:0003677
	Trre12g01907	521	SMART	AT_hook_2	123	135	IPR017956	GO:0003677
	Trre12g01907	521	SMART	AT_hook_2	262	274	IPR017956	GO:0003677
	Trre12g01907	521	SMART	AT_hook_2	303	315	IPR017956	GO:0003677
	Trre12g01907	521	SMART	AT_hook_2	183	195	IPR017956	GO:0003677
	Trre12g01907	521	FunFam	Histone H1.2	36	117	-	-
	Trre12g01907	521	Pfam	linker histone H1 and H5 family	40	103	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Trre12g01907	521	MobiDBLite	consensus disorder prediction	436	485	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g01907	Trre-Chr12	19704945	19709149	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g01907	46	112	Single Myb Histone (SMH) Gene Family	AT1G49950	46.269	1.94e-06	47.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g01907	-		-	mtr:25496745	409.838

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