Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01905 ATGGGTGGTGGAGGTACACTCGTTGATGGCATTCGTCGATTCTTTCATCTTCGCACTTCTATTAACTCACTTCATCACCACAACAACAATGATCTTCTTAATTCAAACAACCTTAACAATGCTAACAACAACCCCTCTTCATTAAATCTTCTCAAAGTTCCTACACATTCCCATTTCATATCTTCTTCTATGGATCGAAACAAAAAGGGTGCAGGAGAGGTAGAATTTTTTACCGAGTATGGAGAGGCAAATCGGTACCAAACACAAGAAGTTGTTGGGAAAGGAAGTTACGGTGTTGTTGTTTCTGCCGTGGATACTATTACAGGGGAAAAAGTTGCAATTAAGAAAATCAATGATGTTTTTGAGCATGTATCGGATGCCACACGGATACTAAGAGAAATTAAACTTCTTCGTTTGCTACGACATCCTGATATAGTAGAAATTAAACATATAATGCTTCCACCTTCACGAAGAGAGTTCAAAGATGTCTATGTTGTGTTTGAGTTAATGGAATCTGACCTTCATCAAGTAATTAAAGCAAATGATGATCTTACTCCCGAGCACTATCAGTTTTTCTTGTACCAGCTTCTTCGGGGCCTGAAATATACACATACAGCCAATGTGTTTCATCGTGATTTGAAGCCAAAAAATATTCTAGCTAATGCTGATTGCAAATTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGATGCTCCGTCAGCTATATTCTGGACTGACTATGTTGCGACTCGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAATATACTCCAGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTTAGTGGCAAGCCATTGTTTCCTGGAAAGAATGTGGTGCACCAATTGGATCTCATGACTGACTTGCTTGGTACTCCTCCTGCTGAATCCATTTCGAGGATTCGAAATGAGAAGGCTAGAAGGTACCTTAGTAGCATGAGGAAAAAGCAACCAGTTCCATTCTCCAAAAAATTTCCAAATGTAGATCCATTGGCTCTTAATTTGCTGGAGCGTTTACTTGCTTTTGATCCTAAAGACCGTCCATCAGCTGAAGAGGCACTATCTGATCCTTACTTTCATGGTTTGTCAAATGTGGACCGTGAACCGTCCACTCAACCCATTTCGAAGCTCGAGTTTGAATTTGAGAGAAGAAAATTGACCAAAGACGATGTTCGAGAACTGATATATCGTGAGATTTTAGAGTATCACCCCCAGATGCTCCAAGAATATCTTAGTGGTGGAGATCAAACAAGCTTCATGTATCCGAGTGGCGTTGATCGGTTCAAGCGACAATTTGCACATCTTGAGGAGCATTACGGGAAAGGTGAAAAAGGCTCTCCATTGTTGAGACAACATGCCTCCTTACCTAGAGAGCGGGTTCCTGCTCCGAAAGATGAAAATAATCAAAATAATGATTGTGAAAACCCAACCGGAGCAAATCTTCATAGCCCATCAGGTGTAACAAATTCTGGTGACGCAAATGCACAAAACGGACCATCAAAATGTCTGTTGAAGAGTGCCAGCATTAGCGGTTCAAAATGTATAGATGTCAAAAAAAGTAAAGATCCTGAGGAGGAACCAATTCCAGAGGTCAATGATGAAGCGGTGGACGAGTTGTCGGAGAAGGTTGCTGCTCTCCTTGCTTAG 1701 0.4068 MGGGGTLVDGIRRFFHLRTSINSLHHHNNNDLLNSNNLNNANNNPSSLNLLKVPTHSHFISSSMDRNKKGAGEVEFFTEYGEANRYQTQEVVGKGSYGVVVSAVDTITGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDVYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYTHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSGKPLFPGKNVVHQLDLMTDLLGTPPAESISRIRNEKARRYLSSMRKKQPVPFSKKFPNVDPLALNLLERLLAFDPKDRPSAEEALSDPYFHGLSNVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLSGGDQTSFMYPSGVDRFKRQFAHLEEHYGKGEKGSPLLRQHASLPRERVPAPKDENNQNNDCENPTGANLHSPSGVTNSGDANAQNGPSKCLLKSASISGSKCIDVKKSKDPEEEPIPEVNDEAVDELSEKVAALLA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01905 566 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 84 429 - -
Trre12g01905 566 ProSitePatterns Protein kinases ATP-binding region signature. 92 116 IPR017441 GO:0005524
Trre12g01905 566 FunFam Mitogen-activated protein kinase 75 180 - -
Trre12g01905 566 SUPERFAMILY Protein kinase-like (PK-like) 80 382 IPR011009 -
Trre12g01905 566 MobiDBLite consensus disorder prediction 533 554 - -
Trre12g01905 566 MobiDBLite consensus disorder prediction 476 520 - -
Trre12g01905 566 Gene3D Transferase(Phosphotransferase) domain 1 172 400 - -
Trre12g01905 566 MobiDBLite consensus disorder prediction 484 520 - -
Trre12g01905 566 CDD STKc_TDY_MAPK 85 422 - -
Trre12g01905 566 Gene3D Phosphorylase Kinase; domain 1 102 423 - -
Trre12g01905 566 ProSiteProfiles Protein kinase domain profile. 86 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01905 566 ProSitePatterns MAP kinase signature. 121 224 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre12g01905 566 FunFam Mitogen-activated protein kinase 401 423 - -
Trre12g01905 566 SMART serkin_6 86 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01905 566 Pfam Protein kinase domain 86 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01905 566 FunFam Mitogen-activated protein kinase 172 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01905 Trre-Chr12 19691892 19696273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01905 1 564 MAP Kinase Gene Family AT1G73670 72.165 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre12g01905 Pkinase 5.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01905 - - gmx:100776784 903.664