Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01901 ATGGAAGAAATCACAGGAGCAGCAGTACCAAAATCATTGATGGAGAATTTGTTAGGTCTTCTGAGAGTTCGTATCAAGCGTGGTGTCAACCTTGCTGTTCGTGATGTTCGTAGCAGTGATCCTTATCTTGTTCTCAAGATGTACAATCAGAAACTTAAGACTCGTGTGATTAAAAAGGATGTTAATCCTGAGTGGAATGAAGATCTTACTCTTTCTGTTATAGATCCTAATCACATAGTTTCATTGACTGTGTATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGACGCAGAGTTTGAGATCTCGACCTACATAGAAACCCTGAGGATGCATGTTACCGGCATAGCAAATGGCACCGTAATCAAACGAATACAACCAAGCAAGCACAACTGCCTTGCTGAAGAGAGCTGTATCTATTATTCCAATGGCAAAATTATCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTTGAAATCAGTCTGCACTGGATTGATCTTCCTGGTTCTAAGGGTTTATGA 537 0.3966 MEEITGAAVPKSLMENLLGLLRVRIKRGVNLAVRDVRSSDPYLVLKMYNQKLKTRVIKKDVNPEWNEDLTLSVIDPNHIVSLTVYDHDTFSKDDKMGDAEFEISTYIETLRMHVTGIANGTVIKRIQPSKHNCLAEESCIYYSNGKIIQDMILRLQNVECGEVEISLHWIDLPGSKGL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01901 178 Pfam C2 domain 19 107 IPR000008 -
Trre12g01901 178 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 16 176 IPR044562 -
Trre12g01901 178 Gene3D C2 domain 15 176 IPR035892 -
Trre12g01901 178 CDD C2_ArfGAP 18 161 - -
Trre12g01901 178 ProSiteProfiles C2 domain profile. 1 116 IPR000008 -
Trre12g01901 178 SMART C2_3c 20 115 IPR000008 -
Trre12g01901 178 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 104 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01901 Trre-Chr12 19653084 19657097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01901 51 178 C2H2 Transcription Factor Family AT1G70790 59.231 5.28e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01901 - - gmx:100810504 304.293