Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01886 ATGACAATATTTTATGGTGGTTCAGTATGTGTGTATGATGACATATCTCCTGAGAAGGTTAAAGCTATCATGTTACTAGCTGGAAATGGCACTAAAATGCAACAAGAAATCTCTATTCCTTCCAAAAAAGATGGTTTCAATATAAGCCAATTATATCCCCCACCATTGCCAATTTCTCAACCAAGGGGAGGATCTTTAGGACCTTCAGTTACCCCTACCAACACTTTGGAATCTCCTATTGTTGCTACTTCTGTAGGATCTACACCTACAAAAGTGATTCAACAAGTAGGTTTGCCTCAGGCACGAAAAGCATCTCTGACTCGGTTTTTGGAGAAGCGAAAGGAAAGGTAA 351 0.396 MTIFYGGSVCVYDDISPEKVKAIMLLAGNGTKMQQEISIPSKKDGFNISQLYPPPLPISQPRGGSLGPSVTPTNTLESPIVATSVGSTPTKVIQQVGLPQARKASLTRFLEKRKER 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01886 116 ProSiteProfiles Tify domain profile. 1 29 IPR010399 -
Trre12g01886 116 Pfam tify domain 1 28 IPR010399 -
Trre12g01886 116 MobiDBLite consensus disorder prediction 53 75 - -
Trre12g01886 116 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 116 IPR040390 -
Trre12g01886 116 Pfam Jas motif 99 116 IPR018467 -
Trre12g01886 116 SMART tify_2 1 29 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01886 Trre-Chr12 19400883 19401720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01886 1 116 Tify Gene Family AT3G17860 43.972 2.16e-21 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre12g01886 tify 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01886 K13464 - gmx:100807288 138.272