Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01885 ATGGAGAAAGAATTCCTTGGCTTCAGTTCCAAAAACAGTCCATGGATTTCTATGAAAGAAGATGCTTCCAACAAAACAAAAGAACCAGTGAAGAGTTTAGGAATGCAGTGGTCATTCTCAAATAAGGGTTCAAACCTTCCTCAATTCTTGTCCTTCAAGAACACTCATGAAGATAGGTCAAGAAACACTCTTATGGATCCAGTAGCTTCTTCTGGATATATGACTATTTCAACTAAAGATGCTTTTGATTCTAATCAGAAATCATTCTTGGGTGTGACACAGGAAATGGGAAAGCTAGTAGGAAACAAGCATGGAATGACAGTTTATCCTTTGCAATCTTCTGATGAACAATTTTCAGTTTCAAACCAATCTAATAATCAAATGGTTAATTCAGTTACAAGATCACAATCTTTTGGTTCTAAATCCTCTGCCACACCTGTATCTGTTCTTCCATCAATAGGTTCCATAGTTGGTTCTACTGACTTAAGGAATAGGAATTGTTCCAAATCCAATGGTACTATGACAATATTTTATGGTGGTTCAGTATGTGTGTATGATGACATATCTCCTGAGAAGGTTAAAGCTATCATGTTACTAGCTGGAAATGGCACTAAAATGCAACAAGAAATCTCTATTCCTTCCAAAAAAGATGGTTTAAATATAAGCCAATCATATCCCTCACCATTGCCAAATTCTCAACCAAGGGGAGGATCTTTAGGACCTTCAGTTACCCCTACCAACACTTTGGAATCTCCTATTGTTGCTACTTCTGTAGGATCTACACCTACAAAAGTGATTCAACAAGTAGGCTTGCCTCAGGCACGAAAAGCATCGCTGACTCGGTTTTTGGAGAAGCGAAAGGAAAGGGCAATGAACACATCACCATACTATATGAGCAAGAAATCACCTGAAAGCAGTACTCCTGGATCAGATAGTGCTAGTTTCTCCATTGACTTCTCTAGTTCAAGTCCTGTACCAGCCACAAACATGCCCTTAAGAAGAACATGTATGGAAGGGATTAGATGA 1026 0.385 MEKEFLGFSSKNSPWISMKEDASNKTKEPVKSLGMQWSFSNKGSNLPQFLSFKNTHEDRSRNTLMDPVASSGYMTISTKDAFDSNQKSFLGVTQEMGKLVGNKHGMTVYPLQSSDEQFSVSNQSNNQMVNSVTRSQSFGSKSSATPVSVLPSIGSIVGSTDLRNRNCSKSNGTMTIFYGGSVCVYDDISPEKVKAIMLLAGNGTKMQQEISIPSKKDGLNISQSYPSPLPNSQPRGGSLGPSVTPTNTLESPIVATSVGSTPTKVIQQVGLPQARKASLTRFLEKRKERAMNTSPYYMSKKSPESSTPGSDSASFSIDFSSSSPVPATNMPLRRTCMEGIR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01885 341 MobiDBLite consensus disorder prediction 295 329 - -
Trre12g01885 341 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 121 309 IPR040390 -
Trre12g01885 341 MobiDBLite consensus disorder prediction 290 341 - -
Trre12g01885 341 ProSiteProfiles Tify domain profile. 167 202 IPR010399 -
Trre12g01885 341 Pfam tify domain 172 201 IPR010399 -
Trre12g01885 341 SMART tify_2 167 202 IPR010399 -
Trre12g01885 341 MobiDBLite consensus disorder prediction 213 248 - -
Trre12g01885 341 Pfam Jas motif 272 297 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01885 Trre-Chr12 19385081 19392380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01885 35 302 Tify Gene Family AT3G17860 37.421 4.83e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre12g01885 tify 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01885 K13464 - gmx:100807288 368.237