Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01884 ATGGTCTTCAAAGGAAGATTCTTCTCTTCCAAAAAATCTGAAACTTCTAGTCCAGATGCTTCTTCTAACAGTCCTCGATCAATCTCCTCAAATTCTCCTTCTAGATCTGATAAGAAAAAAGCTAAATCAACCGTTACTCAAATCCTAAACTCCGCCGGAACAACCACCAGCGGCAGCGGAGGAAGCGGCGGCGGATTTCTCGGATCATCGGCTTCTAGTCGGAAGACGCAAATTAAAGAAGGGAGTAAGAAGAAAGATGTTGTTAAAGGAAAGGAGAGTGAGATTTCGAATCTGTTGGAATCTCGCTCTCGTTCTGGTTCTGGTTCGAAGAAATTGACTCCGGCAACGGCGGTGGAGGTGAAAGAGTTACCGTCACCGTCGCCGTATTCTTCTTCATCGTCGACGGCTGCGGCTTCTGTTTCGCCAATTTTGGCGTCGTCGTTAGGGTTGAATAGGATAAAGACGAGATCGGGACCGTTACCACAGGAGAGTTTTTTTGGTTTTAGAGGTGACAAGGGAGGAGCTACGGCGGCGGTGCTTGGTGCTAGTAATCTTTCGAGGCCTGGTGTTGGGAAGAAGAAGGAGTCTGGGAATCAGAATAGAGTAGGGTTTCGGGAAGGTTTGGTAATTGGTGGTAGTGTTGATAATGGGAGTAGTTTGGATAGTTTGTCATCGGGGAGTGGTGTACATTCAATGGATCAGAGTCCGGTTGTGTTGCCGCGGTCGCGGTTACAGAATGGTGAATCTTCTTCTGAAACAGGAGAGCAGACATCATCACAGACCCAGACTGGAGGCTTAAGAAGTGAAGATGTTTGCACCCCAGAGACTGCATATGATTTTGAAAATCCAAAAGAATCCGAATCTCCCCGTTTCCAAGCTATATTACGTGTCACAAGTGCCCCCGGAAAGAGGTTTCCTGGTGATATCAAGAGTTTTTCCCACGAGTTAAATTCTAAAGGTGTCCGGCCCTTTCCATTTTGGAAGCCTCGGAGGTTAAATAATAACCTTGAGGAGATCTTGGTTGTTATTAGGGCTAAATTTGATAAAGAAAAGGAAGAGGTGAACTCTGAACTGGCTATTTTTGCAGCAGACCTGGTTGGAGTTCTTGAAAAAAATTCAGACAATCATCCGGAATGGCAAGAGACAATTGAAGACTTGCTAATTTTGGCCAGACGCTGTGCCATGACTACATCTGGGGAGTTTTGGCTTCAGTGTGAAAGCATAGTTCAGGATTTGGATGATAGACGTCAAGAGCTACCTCCAGGGACGCTAAAGCAACTTCACACTCGAATGCTCTTCATTCTCACACGGTGTACTAGGTTGTTGCAATTCCACAAGGAGAGTGCATTGGCTGAGGATGAACACGTTTTCAACCTTCGTCAATCCAGAGTCTTGCATACTACTGGAAAAAGTATTCCTCCTAGTGGGGGAAGGGATTCTAAAAGTTTTGGTGTTGCAAAGACCTCAAAAGCTTCAACCAAAAAAGCTTATAGCCAAGAGCAGAGTAGCTTGGTTTGGAAGAAAGGTGTTATGAAACCAGAAATTCAGTTGCCTGCTGCCGATGATGATACTTTAAAAAGCTTCGAGTCTCCTTCTGGCAGGAATCGGATGGCTTCATGGAAAAAATTCCCATCTCCATCAGGAAAAAGTCCTACAGAAACTGTTCAGTTGAAGGACCAAAGTTATGAGACAGTTGAACCTTCAAAGACACCTGATAAGAGATTAACTTCTGATATAGATCTCTCTTCTGCAAAGCCGTCTGAGCTTCTCGCTGTCAAAGATTCCCATGACCATGCTTCCAAGCACCAACACAAACCTTCCTGGGGATACTGGGGAGACCAGCCAGTTAGTAATGACGATAGTTCAATAATTTGTCGAATATGCGAAGAGGATGTACCTACTTCACATGTTGAAGATCATTCAAGGATTTGTGCAGTTGCTGACAGATGTGATCAGAAGGGTCTGAGTGTCAACGAGCGTCTTTTAAGAATTTCTGAAGCACTATCATCTGCTCAGAAGGATTCCCAACAAATGCTTGGAAGTCCCGATGTTGCAAAAGTGTCAAATTCAAGTATGACTGAAGAATCCGATGTTCTTTCCCCTAAACTTAGCGATTGGTCGCGCAGAGGCTCAGAGGATATGCTAGACTGCTTCCCTGAAACGGATAATTTGGCTTTTATGGATGACCTAAAAGGATTGCCACTTATATCATGTAGAACTCGTTTTGGTCCAAAGTCTGACCAAGGTATGACAACATCATCTGCAGGGAGCATGACTCCTAGGTCTCCTTTAATGACACCAAGGACAAGTCAGATTGACTTGCTCTTGGCGGGGAAGGGTGCTTATTCCGAAAATGATGATCTGCCACAGATGAATGAACTTGCTGATATAGCACGATGTGCAGCCAATGCTAGTCTGGATGATGATCGCACAGCGTCGTATTTATTATCTTGTCTTGATGACTTGAGGGTTGTAGTAGAACGAAGGAAGTCCGATGCACTTACTGTTGAAACCTTTGGAACACGCATTGAGAAGCTGATTCGGGAGAAGTATTTGCAGCTTACTGAGATGGTGGATGTTGAAAAAATAGATGTAGAGAGCCCTGTGATGGATGATGATGTCATCTTGGAAGATGATGTCGTTCGCAGCTTGAGAACAAGCCCAATTCATTCTTCAAAGGATCGTACCTCTATTGACGACTTTGAGATTATAAAACCTATCAGCCGTGGGGCATTTGGAAGGGTTTTCTTGGCTAAGAAGAGGACAACTGGTGATCTCTTTGCAATAAAGGTTCTTAAGAAGGCAGATATGATCCGTAAGAATGCTGTAGAAAGTATATTAGCGGAACGTGATATCTTAATTACAGTGCGCAATCCTTTTGTGGTTCGATTTTTCTATTCTTTTACATGTCGTGAGAACTTGTATCTTGTCATGGAGTATCTGAATGGTGGAGACTTATATTCATTACTAAGGAATTTAGGTTGTCTAGATGAGGAAGTTGCCCGTGTATATATTGCTGAAGTGGTGCTCGCATTAGAGTATTTGCACTCACTGCGTGTGGTGCATCGTGACTTGAAGCCTGACAATTTATTGATCGCACATGATGGTCACGTCAAGTTAACAGACTTCGGTCTTTCAAAAGTTGGTCTCATCAACAGCACGGATGATTTGTCTGGTCCAGCAGTGAGTGGGACATCTCTACTTGGGGAGGATGAATCTCATACATTTACATCTGAGGATCAAAGGGAGCGGAGGAAGAAACGTTCTGCTGTTGGCACACCTGATTACTTAGCTCCTGAGATACTTTTAGGAACTGGACATGCGTACACTGCGGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTGCTTGTTGGTATTCCACCGTTCAATGCAGAGCATCCTCAGACTATATTTGATAATATTCTTAACCGTAAGATACCTTGGCCTGAAGTTCCTGATGAAATGAGTCTTGAAGCACATGATCTTATTGATCGATTGTTGACAGAAGATCCTAATCAAAGACTAGGAGCTAGAGGCGCATCAGAGGTAAAGCAACATGTTTTCTTCAAGGATATAAATTGGGACACGCTAGCCAGACAGAAGGCTGCATTTGTTCCTACTTCTGAGAGTGCTCTAGACACCAGTTACTTCACTAGTCGCTACTCATGGAATACTTCTGATGGCCTTGCATATCCGCCAAGTGATTTTGAAGATTCTAGTGATAATGATAGCTTAAGTGGCAGCAGCAGTTGCCTGAGCAATCGTCATGATGAAGTGGGAGATGAATGTGGGGGTCTTGCCGAGTTTGATTCTAGTTCTTCTGTCAATTACTCTTTCAGTAATTTCTCCTTTAAGAATCTCTCCCAACTTGCATCAATCAATTATGATCTCACCAAGGGATGGAAAGATGATCCCTCAACAAATTCTAGTGCATAG 3939 0.4369 MVFKGRFFSSKKSETSSPDASSNSPRSISSNSPSRSDKKKAKSTVTQILNSAGTTTSGSGGSGGGFLGSSASSRKTQIKEGSKKKDVVKGKESEISNLLESRSRSGSGSKKLTPATAVEVKELPSPSPYSSSSSTAAASVSPILASSLGLNRIKTRSGPLPQESFFGFRGDKGGATAAVLGASNLSRPGVGKKKESGNQNRVGFREGLVIGGSVDNGSSLDSLSSGSGVHSMDQSPVVLPRSRLQNGESSSETGEQTSSQTQTGGLRSEDVCTPETAYDFENPKESESPRFQAILRVTSAPGKRFPGDIKSFSHELNSKGVRPFPFWKPRRLNNNLEEILVVIRAKFDKEKEEVNSELAIFAADLVGVLEKNSDNHPEWQETIEDLLILARRCAMTTSGEFWLQCESIVQDLDDRRQELPPGTLKQLHTRMLFILTRCTRLLQFHKESALAEDEHVFNLRQSRVLHTTGKSIPPSGGRDSKSFGVAKTSKASTKKAYSQEQSSLVWKKGVMKPEIQLPAADDDTLKSFESPSGRNRMASWKKFPSPSGKSPTETVQLKDQSYETVEPSKTPDKRLTSDIDLSSAKPSELLAVKDSHDHASKHQHKPSWGYWGDQPVSNDDSSIICRICEEDVPTSHVEDHSRICAVADRCDQKGLSVNERLLRISEALSSAQKDSQQMLGSPDVAKVSNSSMTEESDVLSPKLSDWSRRGSEDMLDCFPETDNLAFMDDLKGLPLISCRTRFGPKSDQGMTTSSAGSMTPRSPLMTPRTSQIDLLLAGKGAYSENDDLPQMNELADIARCAANASLDDDRTASYLLSCLDDLRVVVERRKSDALTVETFGTRIEKLIREKYLQLTEMVDVEKIDVESPVMDDDVILEDDVVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHVKLTDFGLSKVGLINSTDDLSGPAVSGTSLLGEDESHTFTSEDQRERRKKRSAVGTPDYLAPEILLGTGHAYTADWWSVGVILFELLVGIPPFNAEHPQTIFDNILNRKIPWPEVPDEMSLEAHDLIDRLLTEDPNQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNTSDGLAYPPSDFEDSSDNDSLSGSSSCLSNRHDEVGDECGGLAEFDSSSSVNYSFSNFSFKNLSQLASINYDLTKGWKDDPSTNSSA 1312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01884 1312 ProSiteProfiles AGC-kinase C-terminal domain profile. 1191 1295 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre12g01884 1312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1020 1032 IPR008271 GO:0004672|GO:0006468
Trre12g01884 1312 SUPERFAMILY Protein kinase-like (PK-like) 898 1234 IPR011009 -
Trre12g01884 1312 FunFam probable serine/threonine protein kinase IREH1 899 988 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 517 581 - -
Trre12g01884 1312 Pfam Protein kinase domain 901 1190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01884 1312 MobiDBLite consensus disorder prediction 9 32 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 744 766 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 1238 1254 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 545 564 - -
Trre12g01884 1312 Coils Coil 333 353 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 1062 1090 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 1073 1090 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 594 613 - -
Trre12g01884 1312 Gene3D Phosphorylase Kinase; domain 1 899 1219 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 565 579 - -
Trre12g01884 1312 ProSiteProfiles Protein kinase domain profile. 901 1190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01884 1312 MobiDBLite consensus disorder prediction 77 98 - -
Trre12g01884 1312 SMART serkin_6 901 1190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01884 1312 MobiDBLite consensus disorder prediction 215 271 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 1 137 - -
Trre12g01884 1312 CDD STKc_MAST_like 907 1195 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 43 76 - -
Trre12g01884 1312 Gene3D Transferase(Phosphotransferase) domain 1 985 1208 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 215 269 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 1235 1254 - -
Trre12g01884 1312 PANTHER SERINE/THREONINE-PROTEIN KINASE 603 1284 - -
Trre12g01884 1312 MobiDBLite consensus disorder prediction 467 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01884 Trre-Chr12 19355573 19368033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01884 65 1306 AGC Kinase Gene Family AT3G17850 66.508 0.0 1617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Trre12g01884 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01884 - - tpra:123913507 2347.78