Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01882 ATGCAAATGAAGTTTCACAAACTCAAACTCTTGTTCTTTTTTCTGACAATTTTTCTTCCGTCAGTAAAACCTGATTTAACTTCTGAACGCGCCGCTCTTTTAACACTACGCGCTGCCGTAACCGGCAGAACTCTTCTCTGGAACACAACCGCCGCCACTCCTTGTAACTGGCCCGGTGTCCATTGTGACCAAAACCACACTCACGTAGTCGAGCTTCATCTCCCTGCTGTTTCACTCTCCGGCAAACTTCCCGCCGGCGTATTCTCCGACCTCCCTAACCTCCACACTCTCAGCCTTCGTTTCAATTCCCTCTCCGGTCCTCTTCCTTCTGACATCTCTGCTTGCACCTCCCTCAAAAACCTCTACCTTCAGCAGAATCTTCTCTCCGGCGAAATTCCGGCGACACTGTTTCAACTCACCGGTCTTGTTCGTCTCAATTTGGGTTCAAATAACTTCTCCGGTAAAATTCCGGTTGGGTTTCAAAACCTAACCCGGTTGAAAACCCTGTATCTTCAAAACAACCGGTTCACCGGTTCTCTTAGTGAGTTGAACCGGGTTCAACTCGATCAGTTCAATGTTTCAAACAACATGTTGAACGGTTCAGTTCCTGAAAAGTTGCAAACTTTTGGTAAAGATTCGTTTTTGGGTAATCTCTTATGTGGGAAACCCCTTAACCCTTGTCCTAAAGAAGGAGGTGTAAATAGTGGAACTGGGGGTGCAAATAGTGGTAATGGAAATTCAAGTGTGGTTGATGGAAATCAAGGGTTTGTGAAGAACAAGAAGAAAGGAAAATTATCTGGTGGTGCTATAGCTGGAATTGTTATTGGGTCTGTTGTGATTCTTTTGTTTCTAGTTTTTGCTTTGATTCTCTTATGCAGGAATAGAAATGGTGAAAAAACTAGTTCAATTGATGATGTTGCAGCAACTTTGAAGCATAATCAGAATGATGAGGAGATTCATGGTGAGAATATTGGAAATGGGTATTCATCGGCCGCAGCGGCTATTGCTGCGCCGGCGGCGGTGAATGGTGAGAGAGGTAGTGAAAGTGTTGTTATTGGTGGTGGAGATAAAAAATTGGTTTTTTTTAGGAATTGGGGTAAGGTGTTTGATTTGGAGGATTTGTTAAGAGCTTCTGCTGAGGTATTAGGGAAAGGGACTTTTGGGACATCTTATAAGGCAGTTTTGGAGGTTGGTCCTGTGGTTGTGGCTGTCAAGAGGTTAAGGGATGTGACTATTTCTGAGAGGGAATTTAAGGAGAAGATTGAGAGGGTTGGTGCAATGGTTCATGAAAATTTAGCACCTCTTAGGGCTTACTATTATAGTAGAGATGAGAAGCTTCTTGTTCATGATTATTTGCATATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGGAGGTAGGACACCCCTAAATTGGGAAATGAGATCAGGCATTGCACTTGGAGCTGCTCGCGGCATCGAGTACTTACATTCACAAGGACCTAATGTTTCTCATGGAAACATAAAATCATCCAACATTTTGCTAACCAAGTCCTATGATGCAAGAGTATCTGATTATGGTCTAGCACATCTCGTTGGTCCTTCATCCACACCTAACAGGGTTGCCGGCTACCGTGCTCCCGAAGTAACTGATCCACGGAAAGTTTCTCAGAAGGCAGATGTATACAGCTTTGGTGTATTGCTCTTAGAACTTCTGACTGGGAAAGCTCCAACTCATGCCCTCTTGAACGACGAAGGAGTCGACCTTCCGAGATGGGTGCAATCGGTTGTTAAAGAAGAATGGACTTCTGAGGTCTTCGATTTTGAACTCCTTAGGTATCAAAATGTTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCAGTAGATTGCGCTGCTACTTACCCCGATAACCGTCCTTCAATGTCGCAAGTGAGACAGCACATTGAAGAGTTGCATAGGTCTAGCTTGAAAGAAAGTCTAGACCAAATTCAACAACCTGGTGACATAGATGATAACTCCTCTAGATGA 2013 0.4386 MQMKFHKLKLLFFFLTIFLPSVKPDLTSERAALLTLRAAVTGRTLLWNTTAATPCNWPGVHCDQNHTHVVELHLPAVSLSGKLPAGVFSDLPNLHTLSLRFNSLSGPLPSDISACTSLKNLYLQQNLLSGEIPATLFQLTGLVRLNLGSNNFSGKIPVGFQNLTRLKTLYLQNNRFTGSLSELNRVQLDQFNVSNNMLNGSVPEKLQTFGKDSFLGNLLCGKPLNPCPKEGGVNSGTGGANSGNGNSSVVDGNQGFVKNKKKGKLSGGAIAGIVIGSVVILLFLVFALILLCRNRNGEKTSSIDDVAATLKHNQNDEEIHGENIGNGYSSAAAAIAAPAAVNGERGSESVVIGGGDKKLVFFRNWGKVFDLEDLLRASAEVLGKGTFGTSYKAVLEVGPVVVAVKRLRDVTISEREFKEKIERVGAMVHENLAPLRAYYYSRDEKLLVHDYLHMGSLSALLHGNKGGGRTPLNWEMRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDYGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNDEGVDLPRWVQSVVKEEWTSEVFDFELLRYQNVEEEMVQLLQLAVDCAATYPDNRPSMSQVRQHIEELHRSSLKESLDQIQQPGDIDDNSSR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01882 670 Gene3D Ribonuclease Inhibitor 184 231 IPR032675 -
Trre12g01882 670 FunFam Probable inactive receptor kinase RLK902 26 184 - -
Trre12g01882 670 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Trre12g01882 670 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Trre12g01882 670 Pfam Protein kinase domain 379 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01882 670 SUPERFAMILY Protein kinase-like (PK-like) 380 649 IPR011009 -
Trre12g01882 670 FunFam Probable inactive receptor kinase At1g48480 452 654 - -
Trre12g01882 670 PANTHER OS05G0588300 PROTEIN 11 650 - -
Trre12g01882 670 SMART LRR_typ_2 163 186 IPR003591 -
Trre12g01882 670 SMART LRR_typ_2 139 162 IPR003591 -
Trre12g01882 670 SMART LRR_typ_2 91 115 IPR003591 -
Trre12g01882 670 SUPERFAMILY L domain-like 47 207 - -
Trre12g01882 670 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Trre12g01882 670 ProSiteProfiles Protein kinase domain profile. 376 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01882 670 Gene3D Phosphorylase Kinase; domain 1 356 451 - -
Trre12g01882 670 FunFam pollen receptor-like kinase 1 346 451 - -
Trre12g01882 670 Gene3D Transferase(Phosphotransferase) domain 1 452 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01882 Trre-Chr12 19346032 19348782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01882 25 647 Receptor kinase-like Gene Family AT1G48480 58.852 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre12g01882 Pkinase 3.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01882 - - gmx:100781597 860.522