Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01881 ATGCAAATGCAAATGCAAATGAAGTTTCACAAACTCAAACTCTTGTTCTTTTTTCTGACAATTTTTCTTCCGTCAGTAAAACCTGATTTAACTTCTGAACGCGCCGCTCTTTTAACACTACGCGCTGCCGTAACCGGCAGAACTCTTCTCTGGAACACAACCGCCGCCACTCCTTGTAACTGGCCCGGTGTCCATTGTGACCAAAACCACACTCACGTAGTCGAGCTTCATCTCCCTGCTGTTTCACTCTCCGGCAAACTTCCCGCCGGCGTATTCTCCGACCTCCCTAACCTCCACACTCTCAGCCTTCGTTTCAATTCCCTCTCCGGTCCTCTTCCTTCTGACATCTCTGCTTGCACCTCCCTCAAAAACCTCTACCTTCAGCAGAATCTTCTCTCCGGCGAAATTCCGGCGACACTGTTTCAACTCACCGGTCTTGTTCGTCTCAATTTGGGTTCAAATAACTTCTCCGGTAAAATTCCGGTTGGGTTTCAAAACCTAACCCGGTTGAAAACCCTGTATCTTCAAAACAACCGGTTCACCGGTTCTCTTAGTGAGTTGAACCGGGTTCAACTCGATCAGTTCAATGTTTCAAACAACATGTTGAACGGTTCAGTTCCTGAAAAGTTGCAAACTTTTGGTAAAGATTCGTTTTTGGGTAATCTCTTATGTGGGAAACCCCTTAACCCTTGTCCTAAAGAAGGAGGTGTAAATAGTGGAACTGGGGGTGCAAATAGTGGTAATGGAAATTCAAGTGTGGTTGATGGAAATCAAGGGTTTGTGAAGAACAAGAAGAAAGGAAAATTATCTGGTGGTGCTATAGCTGGAATTGTTATTGGGTCTGTTGTGATTCTTTTGTTTCTAGTTTTTGCTTTGATTCTCTTATGCAGGAATAGAAATGGTGAAAAAACTAGTTCAATTGATGATGTTGCAGCAACTTTGAAGCATAATCAGAATGATGAGGAGATTCATGGTGAGAATATTGGAAATGGGTATTCATCGGCCGCAGCGGCTATTGCTGCGCCGGCGGCGGTGAATGGTGAGAGAGGTAGTGAAAGTGTTGTTATTGGTGGTGGAGATAAAAAATTGGTTTTTTTTAGGAATTGGGGTAAGGTGTTTGATTTGGAGGATTTGTTAAGAGCTTCTGCTGAGGTATTAGGGAAAGGGACTTTTGGGACATCTTATAAGGCAGTTTTGGAGGTTGGTCCTGTGGTTGTGGCTGTCAAGAGGTTAAGGGATGTGACTATTTCTGAGAGGGAATTTAAGGAGAAGATTGAGAGGGTTGGTGCAATGGTTCATGAAAATTTAGCACCTCTTAGGGCTTACTATTATAGTAGAGATGAGAAGCTTCTTGTTCATGATTATTTGCATATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGGAGGTAGGACACCCCTAAATTGGGAAATGAGATCAGGCATTGCACTTGGAGCTGCTCGCGGCATCGAGTACTTACATTCACAAGGACCTAATGTTTCTCATGGAAACATAAAATCATCCAACATTTTGCTAACCAAGTCCTATGATGCAAGAGTATCTGATTATGGTCTAGCACATCTCGTTGGTCCTTCATCCACACCTAACAGGGTTGCCGGCTACCGTGCTCCCGAAGTAACTGATCCACGGAAAGTTTCTCAGAAGGCAGATGTATACAGCTTTGGTGTATTGCTCTTAGAACTTCTGACTGGGAAAGCTCCAACTCATGCCCTCTTGAACGACGAAGGAGTCGACCTTCCGAGATGGGTGCAATCGGTTGTTAAAGAAGAATGGACTTCTGAGGTCTTCGATTTTGAACTCCTTAGGTATCAAAATGTTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCAGTAGATTGCGCTGCTACTTACCCCGATAACCGTCCTTCAATGTCGCAAGTGAGACAGCACATTGAAGAGTTGCATAGGTCTAGCTTGAAAGAAAGTCTAGACCAAATTCAACAACCTGGTGACATAGATGATAACTCCTCTAGATGA 2025 0.438 MQMQMQMKFHKLKLLFFFLTIFLPSVKPDLTSERAALLTLRAAVTGRTLLWNTTAATPCNWPGVHCDQNHTHVVELHLPAVSLSGKLPAGVFSDLPNLHTLSLRFNSLSGPLPSDISACTSLKNLYLQQNLLSGEIPATLFQLTGLVRLNLGSNNFSGKIPVGFQNLTRLKTLYLQNNRFTGSLSELNRVQLDQFNVSNNMLNGSVPEKLQTFGKDSFLGNLLCGKPLNPCPKEGGVNSGTGGANSGNGNSSVVDGNQGFVKNKKKGKLSGGAIAGIVIGSVVILLFLVFALILLCRNRNGEKTSSIDDVAATLKHNQNDEEIHGENIGNGYSSAAAAIAAPAAVNGERGSESVVIGGGDKKLVFFRNWGKVFDLEDLLRASAEVLGKGTFGTSYKAVLEVGPVVVAVKRLRDVTISEREFKEKIERVGAMVHENLAPLRAYYYSRDEKLLVHDYLHMGSLSALLHGNKGGGRTPLNWEMRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDYGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNDEGVDLPRWVQSVVKEEWTSEVFDFELLRYQNVEEEMVQLLQLAVDCAATYPDNRPSMSQVRQHIEELHRSSLKESLDQIQQPGDIDDNSSR 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01881 674 SMART LRR_typ_2 143 166 IPR003591 -
Trre12g01881 674 SMART LRR_typ_2 95 119 IPR003591 -
Trre12g01881 674 SMART LRR_typ_2 167 190 IPR003591 -
Trre12g01881 674 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Trre12g01881 674 FunFam pollen receptor-like kinase 1 350 455 - -
Trre12g01881 674 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Trre12g01881 674 PANTHER OS05G0588300 PROTEIN 15 654 - -
Trre12g01881 674 FunFam Probable inactive receptor kinase RLK902 30 188 - -
Trre12g01881 674 ProSiteProfiles Protein kinase domain profile. 380 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01881 674 SUPERFAMILY Protein kinase-like (PK-like) 384 653 IPR011009 -
Trre12g01881 674 SUPERFAMILY L domain-like 51 211 - -
Trre12g01881 674 Gene3D Ribonuclease Inhibitor 188 235 IPR032675 -
Trre12g01881 674 Pfam Protein kinase domain 383 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01881 674 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Trre12g01881 674 Gene3D Transferase(Phosphotransferase) domain 1 456 670 - -
Trre12g01881 674 Gene3D Phosphorylase Kinase; domain 1 360 455 - -
Trre12g01881 674 FunFam Probable inactive receptor kinase At1g48480 456 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01881 Trre-Chr12 19346020 19348782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01881 29 651 Receptor kinase-like Gene Family AT1G48480 58.852 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre12g01881 Pkinase 3.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01881 - - gmx:100781597 860.522