Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01880 ATGTTGTGGGTTGACAAGTATCGTCCCAAAACCCTTGACAATGTTATGGTTCACAACGACATTGCTCAAAATCTCAAGAAATTGGTTACTGAACATGATTGCCCTCATTTGCTGTTCTATGGCCCATCAGGCGCTGGCAAGAAGACACTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCGGGTGCCGAAAAGGTGAAGGTGGAAAATAGGGCGTGGAAAGTGGATGCTGGGAGTAGATCTATTGATTTAGAGCTGACAACATTATCAAGTGCAAATCACATCGAAATGACTCCAAGTGATGCAGGCTTTCAGGACAGATACATCGTTCAAGAAATAATCAAAGAAATGGCTAAGAATAGACCTATCGATACTAAAGGGAATAAAGGATTTAAAGTACTAGTGCTTAATGATGTTGACAAACTCTCCAGAGAAGCGCAGCATTCTCTCCGCAGAACGATGGAGAAATACAGCGCTTATTGCAGATTAATTCTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCAATACGCTCCCGTTGTCTCAATGTACGCATAAATGCACCAAGTGAAGAACAGATAATTGAAGTTTTACAGTTTATTGGTAAGAAAGAAGGGCTGCAACTACCTCCTAGTTTTGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCTATATTGTCATTTGAGACTTGCCGCGTTCAACAGTATCCTTTCACTGAAAAGCAAACAATTCCCCCAATGGACTGGGAGGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCTAGTTCGGGGAAAGTTGTATGAGCTGCTGACCAATTGCATTCCGCCAGAGATCATTTTGAAGAGGCTTCTTTATGAGCTATTGAGGAAACTAGATGCAGAACTAAAGCATGAAATCTGCCATTGGGCAGCATACTATGAGCATAGGATGCGCCTTGGGCAGAAGGCAATTTTTCACATCGAAGCATTTGTGGCTAAGTTTATGAGTGTCTATAAATCCTTCCTAATTGCAACATTTGGCTGA 1065 0.415 MLWVDKYRPKTLDNVMVHNDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGNKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIIEVLQFIGKKEGLQLPPSFAARIAEKSNRNLRRAILSFETCRVQQYPFTEKQTIPPMDWEEYISEIASDIMKEQSPKRLFLVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01880 354 FunFam Replication factor C subunit 3 252 345 - -
Trre12g01880 354 FunFam Replication factor C subunit 5 1 189 - -
Trre12g01880 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Trre12g01880 354 Pfam DNA polymerase III, delta subunit 18 188 - -
Trre12g01880 354 SMART AAA_5 33 192 IPR003593 GO:0016887
Trre12g01880 354 FunFam replication factor C subunit 3 190 248 - -
Trre12g01880 354 CDD HLD_clamp_RFC 189 257 - -
Trre12g01880 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 338 - -
Trre12g01880 354 Gene3D - 252 345 - -
Trre12g01880 354 Gene3D - 1 189 IPR027417 -
Trre12g01880 354 CDD AAA 35 190 - -
Trre12g01880 354 Gene3D - 190 249 - -
Trre12g01880 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 237 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01880 Trre-Chr12 19323303 19327919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01880 1 354 Core DNA Replication Machinery Family AT5G27740 83.616 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01880 K10756 - gmx:100818329 662.914