Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01877 ATGTATCAAATTTCTTCCTCTACATTCCAAAACCAAATCCCATTATCAATGCCATCTTCTTCCCTTTTCACAGTTCCCACCCCTTCAATTCGTTTCCCTTTCTCCTCCACCAGAAACAGCTCTCGTTTTGTCTCTGTTGTCAGAGCCAAAGCTGGAAATGATTACTACTCAACTTTGAATCTTAGCAACAATGCTTCGTTGCAAGAAATCAAAACCTCCTACCGGAAATTAGCGCGCAAGTATCATCCAGATATGAATAAAAGCCCAGGAGCAGAAGAGAAGTTCAAAGAGATTAGTGCTGCCTACGAGGTTCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGACTACAAGGAGAAAATGGAGGACCAGCCAGTGCCTCAGGGGTTGATCCTTCTGATTTATTTGATGTATTCTTTGGTCGTTCGGAGGGACTGTTTAACGATGAAGGGGGTTTCAGCTTCAATATGAGAAACAATAGAAACCGTGGTCATGATATTCGGTATGACCTTCGTCTGAGCTTTGAAGAATCTATTTTTGGAGGAAAGAGAAAGGTCGAAGTTTCTTGTTATGAGACATGTAACAATTGTGATGGTACAGGAGCCAAATCAACGAATAGCATTAAAAAATGCACAAATTGTGGTGGCAAAGGAGGAGAGAAGAAAACTCAGAAAACAGCGTTTGGAATGATGTCTCAGGTTTCTACCTGCTCCAAGTGTGGTGGTCTCGGCATTATAATCACAGAAAGGTGTCGAAAGTGTGATGGCAATGGTCGTGTGCAAGCTAAACGAAAAATGGAAGTGACCGTTCCTCCTGGTGTCAATGATGGAGACACGATGCAAATTCGTGGTGAAGGGAATTTTGATAAGAAGAGGCGTTATACTGGGGATCTTTTTGTTGTCCTCCATGTTGATGAAAAGCAAGGAATTTGGAGAGAAGGTCTCCATTTATACTCAAAGATTAACATTGACTTCACAGAGGCAATACTAGGGTCTGTTAGAAAGGTAGAAACCGTTGAAGGTTTCAGGGACCTTGAAATTCCTTCAGGGATTCAACATGGACATTCAGTAAAGTTATCACGTTTGGGAGTCCCTGACATGAATAAACCATCTATTCGGGGCGATCATTACTTCGTTGTAAATGTCCTTATTCCTAAAGATATCAGTGGCATGGAACGCGCACTTGTTGAGCAGTTAGCTTCACTGAGAGCATCTAGGAGAGGTCATTCATTTTCTTCTGATGACAGTGGGATACCTAAAAGAAAATTCAATGATTTCATGTCGAGGGATACAAAAAGTGATGCCTCAAGCGAGGGAACTGAAACTTCAAATCCTCTTTGGGGATCAATCAAGAACATCTTAAGGAGAGGAAACTCTAAAGAAAAGTTTGCATCAATTAGCCAGGATACATCAACACTGCTGTGGAGATTTGGCAACCAAAAATATTCAGTCTCACATTCCATTTTTGTTGTTCTATTTATATGTTGGATTTTTAAATCTATAGCAAAGTCCAAGCACTTGTTATTTCATAAAACAACCTAG 1557 0.4053 MYQISSSTFQNQIPLSMPSSSLFTVPTPSIRFPFSSTRNSSRFVSVVRAKAGNDYYSTLNLSNNASLQEIKTSYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQGENGGPASASGVDPSDLFDVFFGRSEGLFNDEGGFSFNMRNNRNRGHDIRYDLRLSFEESIFGGKRKVEVSCYETCNNCDGTGAKSTNSIKKCTNCGGKGGEKKTQKTAFGMMSQVSTCSKCGGLGIIITERCRKCDGNGRVQAKRKMEVTVPPGVNDGDTMQIRGEGNFDKKRRYTGDLFVVLHVDEKQGIWREGLHLYSKINIDFTEAILGSVRKVETVEGFRDLEIPSGIQHGHSVKLSRLGVPDMNKPSIRGDHYFVVNVLIPKDISGMERALVEQLASLRASRRGHSFSSDDSGIPKRKFNDFMSRDTKSDASSEGTETSNPLWGSIKNILRRGNSKEKFASISQDTSTLLWRFGNQKYSVSHSIFVVLFICWIFKSIAKSKHLLFHKTT 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01877 518 Pfam DnaJ domain 54 115 IPR001623 -
Trre12g01877 518 MobiDBLite consensus disorder prediction 427 441 - -
Trre12g01877 518 CDD DnaJ_C 171 393 - -
Trre12g01877 518 Pfam DnaJ C terminal domain 172 390 IPR002939 -
Trre12g01877 518 ProSitePatterns Nt-dnaJ domain signature. 95 114 IPR018253 -
Trre12g01877 518 Hamap Chaperone protein DnaJ [dnaJ]. 51 458 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre12g01877 518 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 28 409 - -
Trre12g01877 518 Gene3D - 199 263 - -
Trre12g01877 518 CDD DnaJ 54 107 IPR001623 -
Trre12g01877 518 SUPERFAMILY HSP40/DnaJ peptide-binding domain 317 400 IPR008971 GO:0006457|GO:0051082
Trre12g01877 518 ProSiteProfiles Zinc finger CR-type profile. 186 268 IPR001305 GO:0031072|GO:0051082
Trre12g01877 518 FunFam Molecular chaperone DnaJ 191 268 - -
Trre12g01877 518 SUPERFAMILY HSP40/DnaJ peptide-binding domain 171 309 IPR008971 GO:0006457|GO:0051082
Trre12g01877 518 Gene3D - 169 305 - -
Trre12g01877 518 PRINTS DnaJ domain signature 56 74 IPR001623 -
Trre12g01877 518 PRINTS DnaJ domain signature 90 110 IPR001623 -
Trre12g01877 518 PRINTS DnaJ domain signature 110 129 IPR001623 -
Trre12g01877 518 PRINTS DnaJ domain signature 74 89 IPR001623 -
Trre12g01877 518 MobiDBLite consensus disorder prediction 427 448 - -
Trre12g01877 518 Gene3D - 316 407 - -
Trre12g01877 518 CDD DnaJ_zf 199 263 IPR001305 GO:0031072|GO:0051082
Trre12g01877 518 FunFam Chaperone protein dnaJ A6 chloroplastic 51 157 - -
Trre12g01877 518 Pfam DnaJ central domain 199 263 IPR001305 GO:0031072|GO:0051082
Trre12g01877 518 SMART dnaj_3 53 110 IPR001623 -
Trre12g01877 518 SUPERFAMILY Chaperone J-domain 53 153 IPR036869 -
Trre12g01877 518 Gene3D DnaJ domain 51 155 IPR036869 -
Trre12g01877 518 ProSiteProfiles dnaJ domain profile. 54 118 IPR001623 -
Trre12g01877 518 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 186 266 IPR036410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01877 Trre-Chr12 19301988 19309588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01877 55 115 C2H2 Transcription Factor Family AT1G74250 43.284 1.06e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01877 K03686 - gmx:100782135 732.25