Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01867 ATGAGCACTCGTGGCTGTTGCTTGTGCATGTATTGCGCACTCTACGTTGCTATGTTCTTTTTGATAATTACTATTGTCATCTTCTGGATAGTAATCTCTCCCTCAAGTGTGAAATTCCACGTAACCGACGCAACTCTCACCGAGTTCAACCTCACAAACAACGACTTAAATTACAATTTCAAAGTGAACATCACGGTAAGAAACCCCAACAACAACATCATAGTCTATTATCGAGGAATCAAAGCGATTGCTTGGTACAAAGACAACGATTTTAGTCACATAACTTTGACACCCTTTGATCAAGGACACAAGAATACCACTTTTCTTGGACCTATAGAGTTTAAAGGAAATTCTAAGATCTTCCTTGGACGTCAACAACTTAACGAGTATTCTGAAGAGACGCGTCTTGGGATTTATAAAGACTTGGCTGTTGATTTTGATGTTCGAATTAGAGCTAAGTTTGGAAGCTTTTATAAAAGTGGTCGGTTTAATCCACCGGTTGTGCAGTGTCGTCGTTTGAGAGTTCCTTTGGTTTCTTCTTCCAATGGCAACTCATCATCATCAACATTTTCTTTTAGTGTAAAAAGATGCAGCAGTGGTTCTTTCTTTAGAGATCGTGTCTCAGATAAAGCAGCTGCCACTACAAGAAAATCTGGGGTTTGCTATGACACGATTTGTAGCTAA 684 0.3933 MSTRGCCLCMYCALYVAMFFLIITIVIFWIVISPSSVKFHVTDATLTEFNLTNNDLNYNFKVNITVRNPNNNIIVYYRGIKAIAWYKDNDFSHITLTPFDQGHKNTTFLGPIEFKGNSKIFLGRQQLNEYSEETRLGIYKDLAVDFDVRIRAKFGSFYKSGRFNPPVVQCRRLRVPLVSSSNGNSSSSTFSFSVKRCSSGSFFRDRVSDKAAATTRKSGVCYDTICS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01867 227 PANTHER OS05G0367900 PROTEIN 6 182 IPR044839 GO:0098542
Trre12g01867 227 Pfam Late embryogenesis abundant protein 63 163 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01867 Trre-Chr12 19107746 19108429 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01867 31 182 SNARE and Associated Proteins AT1G32270 28.571 9.25e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01867 - - gmx:100784278 242.662