Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01862 ATGTGTTGCAGACCACATTGGTTTTGGTGCTTATATTGCACAATCTACGGAGTTATGTTCTTTTTCATGATATTCTCGATCATATTCTGGATAGCAATCTCCCCCTCAAGTGTGAAGTTCCACGTAACCGATGCTACTCTCTCCGAGTTCAACCTCACAAATAACAACACCTTATACTACAATTTCAAACTAAACGTCACACTACGAAACCCCAACAACAACATCATAGTCTATTATCGAAGAATCACCGCAATTGCTTGGTACAAAGACAATGATTTTAGTTATTTGAGTTTGTCACCCTTTGATCAAGGACACAAGAATACCACTTTTCTTGGACCTATAGAGTTTATAGGAAATACACGGTTCAAACTTGGACGTAAACAACTTGACGAATATTTTGAAGAGACGCGTCTTGGGGTTTATAATGATTTGGCTGTTGATTTCGATGTTCGAATTAGAGCTAAATTTGGAAGCTTTTATAAAACTGGTCGTTTTAATCCACCGGTTGTGCAGTGTCGTCGTTTGAGAGTTCCTTTAGTTTCGTCGAAAGGAACTAACTCATCATCAACATTTTCTTTTAGTGACAGAAGATGTAGCAGTGGTTCTTTCTTTACAGATCGTGATGCAGATGCAGGAGCTTAA 642 0.3832 MCCRPHWFWCLYCTIYGVMFFFMIFSIIFWIAISPSSVKFHVTDATLSEFNLTNNNTLYYNFKLNVTLRNPNNNIIVYYRRITAIAWYKDNDFSYLSLSPFDQGHKNTTFLGPIEFIGNTRFKLGRKQLDEYFEETRLGVYNDLAVDFDVRIRAKFGSFYKTGRFNPPVVQCRRLRVPLVSSKGTNSSSTFSFSDRRCSSGSFFTDRDADAGA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01862 213 PANTHER OS05G0367900 PROTEIN 10 182 IPR044839 GO:0098542
Trre12g01862 213 Pfam Late embryogenesis abundant protein 65 165 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01862 Trre-Chr12 19081828 19082469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01862 33 180 SNARE and Associated Proteins AT1G32270 29.730 2.95e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01862 - - gmx:100784278 248.054