Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01861 ATGTGTTTCAGTTTCCGCTGTTTCATCTGCCTCTATTGCACAATCTACACGGTTATATTCTTCTTCGTGGCTTTCACAACTGTCCTCTGGATAGTAATCTCGCCATCAAGTGTGAAATTCCACATAACCGATGCTACTCTCACAGAGTTCAACATTACGAATAATAATACCTTATATTACAATTTCAAAGTTAATGTCACCGCACGAAACCCAAACAATAACATCATAGTCAATTATCGACAAATCACTGCAATTGCTTGGTACAAAGATAACGATTTTGGTTATGAGAGTTTGGCACCCTTTGATCAAGGACACAAAAATACAACATTTCTCGGGCCAATTGTATTCAATGGGAGCCGTGCAATCAAACTTGGACATCAACAACTTGACGAGTATTTTGAAGAGACGCGTCTTGGAAATTATAATGATTTGGCTGTTGATTTCGATGTTCAAATTCAAGCTAAATTTGGACGCTTTAAAAGTGGTCGGTTTAGTCCACCAATTGTGCAATGTCGTCGTTTGAGAGTTCCTTTGGTTTCAACTTCCAATAGTACTCACTCATTATCATCACTTTCTTTTAGTGAAAGAAGATGTAGCAGTGGTTCTTTCTTTACGGATCGTAATGCAAATGCCGGAGCTTGA 642 0.3832 MCFSFRCFICLYCTIYTVIFFFVAFTTVLWIVISPSSVKFHITDATLTEFNITNNNTLYYNFKVNVTARNPNNNIIVNYRQITAIAWYKDNDFGYESLAPFDQGHKNTTFLGPIVFNGSRAIKLGHQQLDEYFEETRLGNYNDLAVDFDVQIQAKFGRFKSGRFSPPIVQCRRLRVPLVSTSNSTHSLSSLSFSERRCSSGSFFTDRNANAGA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01861 213 PANTHER OS05G0367900 PROTEIN 8 178 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01861 Trre-Chr12 19068315 19068956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01861 32 185 SNARE and Associated Proteins AT1G32270 27.848 1.97e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01861 - - gmx:100784278 256.144