Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01850 ATGCAAACATCAAAAAAATTCAGACACAGCTTCAACAACAATCTAAGCATTTCTCGAAGTGCTGTTTCTGAATTCTGTTCCTCTTCTTGTCAGAAGGAACATTTGAAAGGAATGAGCTTGCAGTTACGAAAAGAGAGGAGGGAAGGGGGGCCGAGGTTCCCACCACAACGTGCTCCTCGTCAAGAATGGGTTCCGAAAGGAACTGGAACATCCACCACCACCGCTGCCAGCACCTCCACCACTGCTCCCACAACCACTGCCACCGCCACCACAGCTGTTGTCGACCCTACAAATTTGCACTCTCGTCAGAAAAACACTAATGGTGATGGTGGTTCATCCAGTCAAGGATCTGTTGTTGCTCCTCCGTTGACTAGACATAGAAGTAATCATGTTACTCATCGTGTGGAAAGAGAACATGTTGTTCATCGGGTGGAAAGGGAACATGTTGCTCATAGGGTGGAAAGGGAACATGTTGCTCATCAAGTGGAAAGGGAAAATGTTGCTCCTCAAGTGGAAAGGGAAAATGTTGCTCATCGGGTTGAAAGGGAAAATGTTGCTCATCGGGTGGAAAGGGAAAATGTTGCTCATCGGGTGGAAAGAGATAAAGGGAGGAGTGGTAATATGGCCGGTAGGGAATACAGATCGAGGGACTCTAGTTTGCCTCAATTGGTGCAGGAGATTAAAGAGAAGCTCACAAGAGGTACAGTGGAGTGCATGATTTGCTATGATATGGTTCGTAGGTCTGTGCCTATTTGGTCTTGCTCCAGCTGCTACTCTATATTTCACCTGAATTGTATCAAGAAGTGGGCTCGTGCTCCCACCTCGGTTGATTTATCGGCGGAGAAGAATCTAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTTCGTGCAGCATACATCTTCAAGGGATATTAAGTATGTTTGCTTTTGTGGGAAGAGGACAGACCCTCCGCATGATTTGTATCTAACACCTCATTCGTGTGGTGAACCATGTGGGAAGCCTCTTGAGAAGGAGGTGTTGTCTACTGAAGGGAGAAAGGACCAGCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCTGGTCCATGTCCTCCGTGTAAAGCATTTGCCCCTCCTCGTTTGTGTCCTTGTGGAAAGAAAAGAATTGCCACCCGTTGCTCTGATCGGCAGTCTGATCTTACCTGTGGTCAGCGCTGTGATAAGCTTCTTAATTGTGGACGACATCGCTGTGAAAATGCTTGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCTAATCAATGCCTCTTGCTTTTGCAGTAAAATGATGCAGGCTATTTTTTGTGGAGAGATGGCTATGAAAGGTGAATTTAAAGTAGAAGATGGTGTTTTTTCTTGTGGTTCTAATTGTGGAAAGGAACTTAGTTGCGGTAATCATATCTGCCGTGATGTTTGTCATCCAGGCGGCTGCGGTGAATGTGAATTTTTACCAAGCCGGGTTAAGACATGCTGTTGTGGAAAAACAAAGTTGGAGGACGAACGGAAGAGTTGTTTGGATCCAATACCTACATGCTCACAAGTATGTGGCAAGCTCCTTCCTTGCGGGATACATGCTTGTAAGGAGCCATGCCATGTTGGGGAATGTCCACCGTGTCAGGTCCTAATTTCACAGAAATGCCGTTGTGGCTCAACTTCACGAACTGTTGAATGCTATAAAACATTAATGGAAAATCAGAAATTTACTTGTGAAAAGCCTTGTGGGGCAAAGAAAAATTGTGGAAGGCATCGATGTAGTGAAAAATGTTGTCCATTGTCTGGTCCAAATAAGAACTTGACTATTGTGGATTGGGATCCTCACTTTTGTTCCATGCTTTGTGGAAAGAAGCTGAGATGTGGCCAGCATGTATGTGAAACGTTGTGTCACAGTGGTCATTGCCCACCATGTCTTGAAACAATCTTCACCGATTTAACATGTGCTTGTGGTAGGACTTCAATACCTCCTCCCCTACCTTGTGGTACAATGCCTCCCTTATGTCAACTTCCATGTTCAGTTCCTCAGCCGTGTGGTCATTCGGGATCTCATAGTTGTCATTTTGGAGATTGCCCTCCTTGTTCGGTACCCGTGTCGAAAGAATGTGTTGGTGGCCATGTCATTCTTAGGAATATACCTTGTGGCTCAAACAATATTAGATGCAATAATCCATGTGGGAGGACTAGACAATGCGGTTTACATGCATGTGGAAGACCATGTCACTCACCACCTTGTGATACTCTACCTGATTTTGTGAAAGGACACCGAGCGCCATGTGGGCAGACATGTGGTGCTCCAAGGAGTGGCTGTCGGCATATGTGTATGGCTCAATGTCACCCTACCATGTCTTGTCCTGATGTAAGATGTGAGTTCCCCGTTACAATTACTTGCTCTTGTGGCCGCATATCAGCTAATGTTCCTTGTGATGTTGGTGGTAGCAATAGTAATTATAATGCTGATGCAATTTATGAAGCTTCCATTATTCAAAAATTGCCCGCGCCACTTCAACCGGTTGATGCTAACGGCCAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGATGAGGAATGTGCTAAGTTGGAACGTAAAAGGGTTCTTGCCGATGCCTTTGACATCACTCCAAGTCTTGATGCTCTCCATTTCGGTGAGAATTCTTCTTTTGAATTGCTTTCTGACACATTTAGACGTGATCCAAAGTGGGTTTTGGCTGTTGAAGAGAGATGCAAAATATTAGTTCTTGGGAAAAGCAAAGGAACTACACATGGTTTAAAAGTCCATGTCTTTTGCCCTATGGTAAAGGATAAAAGAGATGCCGTGAGATTGATTGCTGAAAGATGGAAGCTTGCGGTGAATGCTGCTGGTTGGGAACCGAAGCGATTTATTGTAATTTCTGCTACTCAAAAATCTAAGGCCCCAGCTTGTGTGCTCGGTGTTAAGGGTACCACAACTTTAAACGCGCCACTTCCTACTGCATTTGATCCCTTGGTTGATATGGACCCAAGGCTTGTTGTATCGTTTCCAGACTTGCCAAGGGACGCTGATATTAGTGCATTGGTGTTGAGATTTGGCGGTGAATGTGAGCTTGTTTGGTTGAACGACAAAAACGCTTTGGCTGTTTTTCATGATCCTGCCCGAGCTGCAACTGCGATGAGGAGATTGGATCACGGAACAGTTTATCAGGGTGCTGTTTCTTTTGTCCAGAATGCCGGAGCATCAGCGGTGTCTTCAGTTACCAATGCATGGGGAGGTATGAAAGATGGAGGAGGACTGTCAACACTGAAAAGTAATCCATGGAAAAAGGCGGTGGTTCTCGACGCGGGTTGGAAAGAAGATTCATGGGGTGATGAACAATGGGCTGCCGGTGGTTCTGCAAATATCCAACCATCAGTTTTGAAGAAAGAAACACCAATACCTGCTTCATTGAATCCTTGGAATGTTTTAAACCAGGAATCAAGTTCGAGTTCATCACCTACAACCGTCATGAAAAGTTTAGCTTTTGGAAAACAAACTGAAAGCAGCAATGTCTCAACTAGGGTGGAATCTTCTTCAGGCGGCGCAAATGGAGTAAACTTCGATGCAAGAGATGCTTCTGAAGTTGTAGATGATTGGGAGAAGGCTTTTGAATGA 3639 0.4523 MQTSKKFRHSFNNNLSISRSAVSEFCSSSCQKEHLKGMSLQLRKERREGGPRFPPQRAPRQEWVPKGTGTSTTTAASTSTTAPTTTATATTAVVDPTNLHSRQKNTNGDGGSSSQGSVVAPPLTRHRSNHVTHRVEREHVVHRVEREHVAHRVEREHVAHQVERENVAPQVERENVAHRVERENVAHRVERENVAHRVERDKGRSGNMAGREYRSRDSSLPQLVQEIKEKLTRGTVECMICYDMVRRSVPIWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQFVQHTSSRDIKYVCFCGKRTDPPHDLYLTPHSCGEPCGKPLEKEVLSTEGRKDQLCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRCSDRQSDLTCGQRCDKLLNCGRHRCENACHVGPCDPCQVLINASCFCSKMMQAIFCGEMAMKGEFKVEDGVFSCGSNCGKELSCGNHICRDVCHPGGCGECEFLPSRVKTCCCGKTKLEDERKSCLDPIPTCSQVCGKLLPCGIHACKEPCHVGECPPCQVLISQKCRCGSTSRTVECYKTLMENQKFTCEKPCGAKKNCGRHRCSEKCCPLSGPNKNLTIVDWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTMPPLCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPCGSNNIRCNNPCGRTRQCGLHACGRPCHSPPCDTLPDFVKGHRAPCGQTCGAPRSGCRHMCMAQCHPTMSCPDVRCEFPVTITCSCGRISANVPCDVGGSNSNYNADAIYEASIIQKLPAPLQPVDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDITPSLDALHFGENSSFELLSDTFRRDPKWVLAVEERCKILVLGKSKGTTHGLKVHVFCPMVKDKRDAVRLIAERWKLAVNAAGWEPKRFIVISATQKSKAPACVLGVKGTTTLNAPLPTAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNAGASAVSSVTNAWGGMKDGGGLSTLKSNPWKKAVVLDAGWKEDSWGDEQWAAGGSANIQPSVLKKETPIPASLNPWNVLNQESSSSSSPTTVMKSLAFGKQTESSNVSTRVESSSGGANGVNFDARDASEVVDDWEKAFE 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01850 1212 SUPERFAMILY RING/U-box 228 298 - -
Trre12g01850 1212 CDD NF-X1-zinc-finger 517 565 - -
Trre12g01850 1212 MobiDBLite consensus disorder prediction 46 124 - -
Trre12g01850 1212 CDD NF-X1-zinc-finger 395 443 - -
Trre12g01850 1212 Pfam NF-X1 type zinc finger 469 486 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 Pfam NF-X1 type zinc finger 405 423 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 Pfam NF-X1 type zinc finger 734 749 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 Pfam NF-X1 type zinc finger 585 596 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 Pfam NF-X1 type zinc finger 624 641 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 Pfam NF-X1 type zinc finger 527 545 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 Pfam NF-X1 type zinc finger 352 367 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 Pfam NF-X1 type zinc finger 681 698 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 CDD RING-CH-C4HC3_NFX1-like 237 294 - -
Trre12g01850 1212 CDD NF-X1-zinc-finger 327 388 - -
Trre12g01850 1212 CDD NF-X1-zinc-finger 614 666 - -
Trre12g01850 1212 MobiDBLite consensus disorder prediction 1152 1192 - -
Trre12g01850 1212 MobiDBLite consensus disorder prediction 1152 1197 - -
Trre12g01850 1212 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 104 1120 IPR034078 GO:0003700
Trre12g01850 1212 ProSiteProfiles Zinc finger RING-type profile. 238 294 IPR001841 -
Trre12g01850 1212 SMART znfxneu3 585 616 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 SMART znfxneu3 624 643 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 SMART znfxneu3 681 699 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 SMART znfxneu3 734 764 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 SMART znfxneu3 405 424 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 SMART znfxneu3 773 794 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 SMART znfxneu3 469 488 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 SMART znfxneu3 527 546 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 SMART znfxneu3 350 368 IPR000967 GO:0005634|GO:0008270
Trre12g01850 1212 MobiDBLite consensus disorder prediction 65 122 - -
Trre12g01850 1212 CDD NF-X1-zinc-finger 671 719 - -
Trre12g01850 1212 CDD NF-X1-zinc-finger 459 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01850 Trre-Chr12 18831093 18835602 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Trre12g01850 zf-NF-X1 0.49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01850 K12236 - gmx:100789059 1665.97