Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01849 ATGAATAGTTTTGTTGATGATGAGAAGTACAAACAAGATGATCAAGATTTGGAATTAGAACAAGAAGATGGTGGTGGCCATGAACATGATCATCAAGAGGAAAATAGTGAAATTATTAAGACAAGAATCTCTAACCATCCTCTCTATGAGCTTCTTGTTGAAGCTCACTTAGATTGTTTGAAGGTTAGTGACATTTCTAACATGGAGACGGAGAAAAAAGATAAGAAGAAAGCAATGAAGAAACAAAACTTGGATATGTTAAGCCAATCTGAGCTTGATCTCTTCATGGAAGCATATTGTTTGGCCCTTAATAAGCTAAAAGAAGCAATGGAAGAACCACAACAGAATTCCATGGAATTCATAAACAACATGCATTCACAACTTAGGGAGCTAACTCAAGCAACTACACCTCCAACCACCGAACCAGAAGCTACTACATCTTCAAGTGAATGCACATTCAGAAGAAACCCAACAATTTAA 480 0.3646 MNSFVDDEKYKQDDQDLELEQEDGGGHEHDHQEENSEIIKTRISNHPLYELLVEAHLDCLKVSDISNMETEKKDKKKAMKKQNLDMLSQSELDLFMEAYCLALNKLKEAMEEPQQNSMEFINNMHSQLRELTQATTPPTTEPEATTSSSECTFRRNPTI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01849 159 Coils Coil 65 85 - -
Trre12g01849 159 Pfam KNOX2 domain 89 132 IPR005541 GO:0003677|GO:0005634
Trre12g01849 159 MobiDBLite consensus disorder prediction 134 159 - -
Trre12g01849 159 Pfam KNOX1 domain 39 62 IPR005540 GO:0003677|GO:0005634
Trre12g01849 159 SMART KNOX1_2 37 78 IPR005540 GO:0003677|GO:0005634
Trre12g01849 159 SMART KNOX2_2 82 133 IPR005541 GO:0003677|GO:0005634
Trre12g01849 159 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 22 136 - -
Trre12g01849 159 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01849 Trre-Chr12 18809966 18812749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01849 37 134 Homeobox Transcription Factor Family AT4G08150 38.095 2.59e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01849 - - psat:127102620 216.853