Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01848 ATGAGCAGTGTTGTGTATGTGGTATATCAAAGGTTTTTATTTCATCTACTCAAAAATAGTTATATGGAATCTGAGATGAATAGTTTTGTTGATGATGAGAAGTACAAACAAGATGATCAAGATTTGGAATTAGAACAAGAAGATGGTGGTGGCCATGAACATGATCATCAAGAGGAAAATAGTGAAATTATTAAGACAAGAATCTCTAACCATCCTCTCTATGAGCTTCTTGTTGAAGCTCACTTAGATTGTTTGAAGGTTAGTGACATTTCTAACATGGAGACGGAGAAAAAAGATAAGAAGAAAGCAATGAAGAAACAAAACTTGGATATGTTAAGCCAATCTGAGCTTGATCTCTTCATGGAAGCATATTGTTTGGCCCTTAATAAGCTAAAAGAAGCAATGGAAGAACCACAACAGAATTCCATGGAATTCATAAACAACATGCATTCACAACTTAGGGAGCTAACTCAAGCAACTACACCTCCAACCACCGAACCAGAAGCTACTACATCTTCAAGTGAATGCACATTCAGAAGAAACCCAACAATTTAA 555 0.3568 MSSVVYVVYQRFLFHLLKNSYMESEMNSFVDDEKYKQDDQDLELEQEDGGGHEHDHQEENSEIIKTRISNHPLYELLVEAHLDCLKVSDISNMETEKKDKKKAMKKQNLDMLSQSELDLFMEAYCLALNKLKEAMEEPQQNSMEFINNMHSQLRELTQATTPPTTEPEATTSSSECTFRRNPTI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01848 184 Pfam KNOX2 domain 114 157 IPR005541 GO:0003677|GO:0005634
Trre12g01848 184 SMART KNOX1_2 62 103 IPR005540 GO:0003677|GO:0005634
Trre12g01848 184 SMART KNOX2_2 107 158 IPR005541 GO:0003677|GO:0005634
Trre12g01848 184 Pfam KNOX1 domain 64 87 IPR005540 GO:0003677|GO:0005634
Trre12g01848 184 MobiDBLite consensus disorder prediction 159 184 - -
Trre12g01848 184 Coils Coil 90 110 - -
Trre12g01848 184 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 46 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01848 Trre-Chr12 18809966 18812824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01848 62 159 Homeobox Transcription Factor Family AT4G08150 38.095 5.97e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01848 - - psat:127102620 259.61