LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g01845	ATGGCTTTAGTCCACCGCCGCCGCAGCCCTAATCTCCGTCTCCCAGAAATCGCCGACCACCGTCCTCGTTTCCCTGTCCCCCTTCCTGCCAATACCTACAAACACCCTTCTTCCTCCTCAACCGCCACCGTTGCCGGCGGTGACACTCTTGCTCCCGGCGACCTTGAAAAAATCTCCGTCCTCGGCCATGGTAACGGCGGCACTGTCTACAAAGTCCGCCACAAAGTCACCTCCACCATATATGCTCTTAAAGTAAATCACAACGACTCTGACCCCATCACGCGCCGCCGTACACTTGCCGAAATCAACATCCTCCGCCGCGCCGCCGATTGTCCCAACATAGTCAAATACCACGGTTCTTTCGAGAAACCCACCGGCGACATCTCCATCTTGATGGAATTCATGGATTCCGGCAGCCTAGAAACCGACCTCAAAACAAATGGCACGTTCTCCGAATCGAAACTCTCCACAGTGGCGCGTGACGTTTTAAACGGCCTGGCGTATCTTCACGCGCGTAACATAGCGCATCGTGATATTAAACCTTCGAACATCCTCGTAAACAACAAAAACGAGGTAAAGATTGCTGATTTTGGTGTAAGTAAATTCATGGGTCGCACGCTTGAAGCATGTAACTCTTACGTTGGCACGTGTGCTTATATGAGTCCTGAACGGTTTGACCCGGAAGTTTATGGCGGGAATTATAACGGTTTTTCAGCTGATATATGGAGTTTGGGTTTAACCCTATTTGAACTTTATGTGGGTCATTTTCCATTTCTTCAATCGGGTCAACGACCCGATTGGGCTACACTTATGTGTGCGATTTGCTTTTCCGACCCGCCAAGCCTCCCCGAGACTGCATCGTCGGAGTTTCGTAATTTTGTCGAGTGTTGTCTTAAAAAGGAATCTGGTGAACGGTGGACGGCGGCTCAATTGTTGACCCACCCGTTTTTGTGTAAAGATATGGAAGTTTGTTAA	975	0.4985	MALVHRRRSPNLRLPEIADHRPRFPVPLPANTYKHPSSSSTATVAGGDTLAPGDLEKISVLGHGNGGTVYKVRHKVTSTIYALKVNHNDSDPITRRRTLAEINILRRAADCPNIVKYHGSFEKPTGDISILMEFMDSGSLETDLKTNGTFSESKLSTVARDVLNGLAYLHARNIAHRDIKPSNILVNNKNEVKIADFGVSKFMGRTLEACNSYVGTCAYMSPERFDPEVYGGNYNGFSADIWSLGLTLFELYVGHFPFLQSGQRPDWATLMCAICFSDPPSLPETASSEFRNFVECCLKKESGERWTAAQLLTHPFLCKDMEVC	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g01845	324	Gene3D	Phosphorylase Kinase; domain 1	32	136	-	-
	Trre12g01845	324	Gene3D	Transferase(Phosphotransferase) domain 1	138	323	-	-
	Trre12g01845	324	FunFam	Dual specificity mitogen-activated protein kinase kinase	45	135	-	-
	Trre12g01845	324	SMART	serkin_6	55	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g01845	324	ProSitePatterns	Protein kinases ATP-binding region signature.	61	84	IPR017441	GO:0005524
	Trre12g01845	324	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	174	186	IPR008271	GO:0004672\|GO:0006468
	Trre12g01845	324	FunFam	Mitogen-activated protein kinase 2	137	323	-	-
	Trre12g01845	324	ProSiteProfiles	Protein kinase domain profile.	55	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre12g01845	324	SUPERFAMILY	Protein kinase-like (PK-like)	52	319	IPR011009	-
	Trre12g01845	324	CDD	PKc_MAPKK_plant_like	54	317	-	-
	Trre12g01845	324	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	45	319	-	-
	Trre12g01845	324	Pfam	Protein kinase domain	56	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g01845	Trre-Chr12	18703063	18704037	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g01845	1	321	MAP Kinase Kinase Gene Family	AT1G73500	58.642	3.94e-125	359

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Trre12g01845		Pkinase	1.6e-64	CL0016