Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01842 ATGGTGTTAGGTTGGGGAAGAAGGAAGAACAAGAAAAACAACAAAGGTTTAAAACCAAACATGGAAGTGGTGATTCCAAATCAATTTAAGTGTCCAATAACACTTGATTTGATGAAAGATCCTGTTACATTGTCAACAGGAATCACTTATGATAGAGAAAGTGTCGAAAGATGGTTCGATGAAGGAAACTATACATGTCCACTTACAAATCAAATTGTGAAGAATTTTGACATGATTCCAAATCATTCTCTTAGGATTATGATTCAAGATTGGTGTGTTGAAAATAGTAAAAATGGTGTTGAGAGGATTCCGACACCAAGAATACCGATTAGTCCTATCGATGTTTCCGAGCTTCTTTTTCGAGTTATGGAATCAACAAGAAGTTTGGATCAATATGGTTGTATTGGATTAGTGGAAAAAATGGAGAAATGGAGTAATGAAAGTGAGAGGAACAAAAAATGTATAGTTGAAAATGGAGCAACAAGTGCATTGGCTTTAGCATTTGATGCTTTTGCTAATGATTCTATTGAAAGAAATATTGTTGTTTTAGAAGTGATTTTATCAGCACTTAATTGGATGTTTCCACTTCAATTAGAAGCTCAAAAAAGTTTAGGCTCAAAAGCTTCATTACATTGCATGATTTGGTTTTTGAAGCATCAAGATGTTAAGGGAAAAGAAAAAGCTATTATTGCATTAAAAGAGATTCTTTCTTTTGGTGATGAGAAGCATGTGGAAGCACTTTTAGAGATTGAAGGTGTTAATCAGCTTTTAATTGAGTTGATTAACAAGAGAATTAGTCCAATAATTACAAAAGCTTCATTGAGGGTAATTTGGTACTTGGTTTCATCTAATTCTAATTTTAATGAAAAAATGAAATTTTCATTTGTTGAATTGGATTTAATTTCTTCAATTTTGAACATTCTTATTGATTCAGAAAAAAGCTTTTGTGAAAAAGCTTTGGTTATTTTGGATTCTTTATTAAGCTGTGATTTTGGAAGGAAAAAAGCTTATGAAAATGATTTAACAATTCCATTGTTAGTGAAAAAAATATTGAGAGTTTCACCATTGACTACAGAGTATTCTGTTTCTTCTATTTGGAAAATGTGCAAATTTGAAGAGAAAAATTATGAAGGAAAAGCTTTGATAGAAGCACTTCAAGTTGGTGCTTTTCAGAAGCTATTATTGGTATTACAAGTTGGTTGTAGTGATGACACCAAAGATAAAGCAACTCAGCTTCTCAAATTGATGAATCCTTATAGGGCTGAATTGGAAGAATGCATTGATTCAGATTTCAAGAATCTTAAGAGATCATATTAA 1317 0.3151 MVLGWGRRKNKKNNKGLKPNMEVVIPNQFKCPITLDLMKDPVTLSTGITYDRESVERWFDEGNYTCPLTNQIVKNFDMIPNHSLRIMIQDWCVENSKNGVERIPTPRIPISPIDVSELLFRVMESTRSLDQYGCIGLVEKMEKWSNESERNKKCIVENGATSALALAFDAFANDSIERNIVVLEVILSALNWMFPLQLEAQKSLGSKASLHCMIWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALLEIEGVNQLLIELINKRISPIITKASLRVIWYLVSSNSNFNEKMKFSFVELDLISSILNILIDSEKSFCEKALVILDSLLSCDFGRKKAYENDLTIPLLVKKILRVSPLTTEYSVSSIWKMCKFEEKNYEGKALIEALQVGAFQKLLLVLQVGCSDDTKDKATQLLKLMNPYRAELEECIDSDFKNLKRSY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01842 438 SUPERFAMILY RING/U-box 23 99 - -
Trre12g01842 438 CDD RING-Ubox_PUB 26 78 IPR045210 -
Trre12g01842 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 103 IPR013083 -
Trre12g01842 438 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Trre12g01842 438 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Trre12g01842 438 FunFam RING-type E3 ubiquitin transferase 25 97 - -
Trre12g01842 438 PANTHER WDSAM1 PROTEIN 22 417 IPR045185 GO:0061630
Trre12g01842 438 Gene3D - 118 431 IPR011989 -
Trre12g01842 438 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
Trre12g01842 438 SUPERFAMILY ARM repeat 144 416 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01842 Trre-Chr12 18673353 18674669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01842 5 438 U-box Gene Family AT5G37490 41.855 3.91e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01842 - - gmx:100794340 639.032