Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01834 ATGCCACAGATTGAAGTTCCTGATCTTTCACTTCAAATTAGTTTACCAAATAGTTCTCCTTCATCAATTTGCACAAATGAAGTTGATGATTTAGATTCACCTAATTTTGATATATGGAAAAATAATATTAATGATTCTACTACACCTCATAGTGATGATTTTTCAACTTCAATCAATCTTCAAAAAACAGATACAAAACTTTCATTAACAACAATTCCTTGTGAAGATGAGAGTCATTGGAAGAGAAAAGAATTTGGTAGATTAAGACCCTTTAATGGAATTCCTCTTTATAGTGATAATAATCCTTCAATAATAGAGAAAGATTCAAACTTTTCACTATATCCTTCTTGTTCTTCTAATTCTTCAACTTTTTATGGTCATAGTGGTTTTGAGGGTATTAAGGGAATTTCAAGGTTTAATGGTATAACTATTGAGAGTTTAAGACCTCAGAAGTTTCAATACTTGAATCAACAAAATCAGCATCATGTTCTACAACATCAACAACATCAGAAGAATGAGTTAGGGAATATGGGAAATTCTGATTTTGGAAATGGATTTGTGAGGTCAAGAATGATTATGCCAAGACAACAAAGTAATAAGAGGAACATGAGGGCTCCGAGAATGCGATGGACTAGTTCTCTTCACAATCGATTCGTTCACGCCGTTGAGCTTCTCGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTTTTGGAGCTAATGGATGTGAAAGATCTAACACTAGCTCATGTCAAGAGCCATTTGCAGATGTATAGAACTGTTAAAAATACTGACAAGCCAGCAGCTTCTTCAGATGGAGATGAGAATTTCATGTCCCTAACACCACCTCATAATCAAAATAAGAACTATAATGAATCTCTAGATCATGATATTGGGCACACTACAAACAATTTATGGGCTAATTCTTCTTCAAGTAAAGAAACATGGACACAAGCTAGTTCCAGAGATTTTGATGAGCTTAGTACACATGAAATCCTATCATCTCAACACACTGGGAACCTTCCTCAGGGAAGCAACTACATACAATCAAGAAGCTTCAAGGATCCAACCATAGATTGTCAGAAGAATCCAAACTTGGAGTTTACCTTAGGGAGATCAAATTAA 1122 0.3503 MPQIEVPDLSLQISLPNSSPSSICTNEVDDLDSPNFDIWKNNINDSTTPHSDDFSTSINLQKTDTKLSLTTIPCEDESHWKRKEFGRLRPFNGIPLYSDNNPSIIEKDSNFSLYPSCSSNSSTFYGHSGFEGIKGISRFNGITIESLRPQKFQYLNQQNQHHVLQHQQHQKNELGNMGNSDFGNGFVRSRMIMPRQQSNKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDENFMSLTPPHNQNKNYNESLDHDIGHTTNNLWANSSSSKETWTQASSRDFDELSTHEILSSQHTGNLPQGSNYIQSRSFKDPTIDCQKNPNLEFTLGRSN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01834 373 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Trre12g01834 373 SUPERFAMILY Homeodomain-like 203 260 IPR009057 -
Trre12g01834 373 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Trre12g01834 373 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 7 372 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre12g01834 373 FunFam Myb family transcription factor 204 262 - -
Trre12g01834 373 Gene3D - 205 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01834 Trre-Chr12 18550271 18558253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01834 185 371 G2-like Transcription Factor Family AT5G16560 50.000 1.30e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre12g01834 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01834 - - cam:101493712 470.314