Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01833 ATGTCAAGAGTTTTTGATTTCATTAAGGACCTCAACAAGGAAAGAGCCATATGGAAAATTGCTGTTCGAGTCGTAGACTCTTGGGTTGTTACAGGAACTAATGGCTTTCAACATCTTGAGATGGTTATCGCTGATGAAAAGGGTGATCGTGTGCATGCCATTACTCGCTATAAGGAATTTGAACACTGGAAGTCTTTTATTCAGGATCGTAAAGTCTATGTGTTGTATAATTGTCAAGTTTATGACAATGAGCTTGGATTGAAACCATGTGAAGGTCCTTTTAAAGTTGTGTTTGGATCAGGTACCAATATTAAGCCAACTCCTGAAATCACTAACATTCCTGTTCAAGACTTTTGGTTCAAAAATTTCAAAGAAGCAAATGATGGGAACTTCAAAATTAATGTTTTATATGAGATCATTGGAGTTCTTCATGAAGTTGTGAAAACACAAACCCTTGCATCCGGCAAAAAACCGTGCACCAACTTAATCCTAACTGATGAAAGTGGCACATTGGTTGATGTTACTCTATGGGAAGCTTTCTCAACTCAACTGAGTAACTATATCAATGCTCGGAAAGACAGAGGACCAATTGTAATCATTTTGACGCATGCTCAATGCAAAAAAGGAGACAATGGGAGAGCCAGCTTCTCTAACAATTGGTCTGGCTCTAAGCTTCTTATTAATTATGAACATCCTTCTATTGAAAGCTTCAAATCATCATTCCAAGACATCACATCAACTCAGGGTGCTACTCAAGACTTTACTCAAGTTTCATCTTCCTCACAATTCTCCGGCAATGATATTTTTTCAAATAGAAGTCAGTTTACATCAATTGCTCAAATGAGGCTCTTTCAGAAGGACACCCAGTGCATAACTATTGGAACAACCAAAATGTTCAATCCTACTCAGTTCGGTTGGTACTATGAAAGCTGTTCAAAATGCACCAAATCTTCCAGAGGTCAGGGTGACAATTATACCTGCTCATGCGGTGAGGAAGTCAAAAGCCCAATTGCTAGGTTTATACTCTGTCCTTCATCATTCATGAATTTTTTTCAATTATTTGCATACAATTTTAAGAGCGCATGA 1086 0.3785 MSRVFDFIKDLNKERAIWKIAVRVVDSWVVTGTNGFQHLEMVIADEKGDRVHAITRYKEFEHWKSFIQDRKVYVLYNCQVYDNELGLKPCEGPFKVVFGSGTNIKPTPEITNIPVQDFWFKNFKEANDGNFKINVLYEIIGVLHEVVKTQTLASGKKPCTNLILTDESGTLVDVTLWEAFSTQLSNYINARKDRGPIVIILTHAQCKKGDNGRASFSNNWSGSKLLINYEHPSIESFKSSFQDITSTQGATQDFTQVSSSSQFSGNDIFSNRSQFTSIAQMRLFQKDTQCITIGTTKMFNPTQFGWYYESCSKCTKSSRGQGDNYTCSCGEEVKSPIARFILCPSSFMNFFQLFAYNFKSA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01833 361 PANTHER OS03G0429900 PROTEIN 7 328 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre12g01833 361 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Trre12g01833 361 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Trre12g01833 361 Gene3D - 111 253 IPR012340 -
Trre12g01833 361 CDD RPA1_DBD_B_like 139 241 - -
Trre12g01833 361 Gene3D - 5 106 IPR012340 -
Trre12g01833 361 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01833 Trre-Chr12 18519334 18521014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01833 1 343 Core DNA Replication Machinery Family AT5G61000 21.096 1.65e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01833 - - tpra:123885385 519.235