Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01824 ATGGAAGGAGGAGGAATGTTATCATCATCTTCATCTTCATCACATTCACAAAACTATATCTACAGAGAGTGTTTAAGAAACCATGCAGCAAGCCTCGGAAGCTACGCTACGGACGGCTGCGGAGAATTCACGTTCGACGACACCTCACCATCAGCTGCAAACAGCCTCCAATGTGCAGCCTGCGGCTGTCACCGGAACTTCCATCGCAAAATAACCGCAATTGTGAGGGAGAACGCCGCCGTCACAATGTCGGATCAGAAGGAAAAGATGTTGGGATTTGCTGAGAAGTTAGGATGGAAATTGCAGAGAAAAGAACTTGATGAAGAGATTGAAAGGTTTTGTGAAAGTGTTGGTGTGAGTAGACAAGTTTTTAAGGTTTGGATGCATAATCATAAGAATTCTGGTTTCTCTAATTCTTCTGATCCTTCTACTGGTAATGCTAATTCCTCTCTTACTCAGTAG 462 0.4372 MEGGGMLSSSSSSSHSQNYIYRECLRNHAASLGSYATDGCGEFTFDDTSPSAANSLQCAACGCHRNFHRKITAIVRENAAVTMSDQKEKMLGFAEKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSGFSNSSDPSTGNANSSLTQ 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01824 153 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 70 IPR006456 -
Trre12g01824 153 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Trre12g01824 153 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 133 - -
Trre12g01824 153 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 71 IPR006456 -
Trre12g01824 153 NCBIfam homeobox domain, ZF-HD class 85 133 IPR006455 -
Trre12g01824 153 SUPERFAMILY Homeodomain-like 84 133 IPR009057 -
Trre12g01824 153 Gene3D - 82 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01824 Trre-Chr12 18421049 18421591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01824 20 132 ZF-HD Transcription Factor Family AT5G60480 35.294 2.67e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre12g01824 ZF-HD_dimer 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01824 - - csv:101204350 194.897