Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01822 ATGGATGGAGATAATGGTCTTAACATAACCAATTGGGGATACTATGAACCTGTTTCGTCTTTTAAGAGTCATCTTGGGTTACAACTGATGCCATCAATGCCGGAAAAGCCTCTACTTGGAGGTCACAATGCTGCGGTTTTGTCGGGTTCTAACGGTGCATTTCGCCATAGGGATATTGGGTTACCACAAACTACATACCCTATGGAGTATATGAGGGATGCATGGATTAGTAGTCAGAGGGATAATAAATATATGAATATGATACCTACTAATCCTCCGGCTTATAGTAATATTCCCGAGACATCTTCGGCTCATCACATTCAAATGATTCGGCCACCTGAATTAGTTAAGGAAGAAAGGCCAATGGAGGAGGCACCTGTGGTTGAGAAGTCGAATGGAACCGGTAAGAAGAGGCAAGGGCCGAAGGTGCCTAAGTCTCCCAAGGCAAAGAAGCCTAAGCGAGGACCTCGTGTGCCGAAGGACGAGAATTCTCCTTCGGTTCAACGAACACCGAGGGCTCCAAAGAAAACTACTGAAATTGCAATTAATGGGATTGATTTGGATATTTCTAGTATTCCAATTCCTGTTTGTTCGTGCACAGGAACACCTCAACAGTGTTATAGATGGGGATCGGGTGGGTGGCAATCTGCATGTTGCACAACAGCTGTATCGATATATCCTTTACCTATGAGTACTAAACGGCGCGGTGCTAGAATAGCCGGAAGGAAAATGAGTATAGGAGCATTCAAGAAAGTTTTAGAGAAACTTGCGGCTGAGGGCTATAACTTTTCTAATCCAATTGATTTGAGGACTTACTGGGCAAAACATGGCACCAACAAGTTTGTTACTATCAGGTAG 858 0.4394 MDGDNGLNITNWGYYEPVSSFKSHLGLQLMPSMPEKPLLGGHNAAVLSGSNGAFRHRDIGLPQTTYPMEYMRDAWISSQRDNKYMNMIPTNPPAYSNIPETSSAHHIQMIRPPELVKEERPMEEAPVVEKSNGTGKKRQGPKVPKSPKAKKPKRGPRVPKDENSPSVQRTPRAPKKTTEIAINGIDLDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTAVSIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01822 285 Pfam GAGA binding protein-like family 1 285 IPR010409 -
Trre12g01822 285 PANTHER - 1 285 IPR010409 -
Trre12g01822 285 SMART GAGA_bind_2 1 285 IPR010409 -
Trre12g01822 285 MobiDBLite consensus disorder prediction 115 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01822 Trre-Chr12 18398537 18399394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01822 1 285 BBR or BPC Transcription factor family AT2G01930 51.515 5.46e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trre12g01822 GAGA_bind 4.8e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01822 - - mtr:120575876 529.635