Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01821 ATGTTAGCTAATAGCTTATCTCCATCTTCACTTCCATCTTCTGAGCCTTTTTCTTGCAATGAAAATGGCACTTCTTCCACTAATAAAAGGAAAAGAAGACCCGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTATTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTACAGATGCATAGGAGAAGGCATAAGGTACCATGGAAGTTATTGAAGAGAGAAACACCAGTTGTTAGAAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGATCTTGTTGGTATCAAAAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGCTCTAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCTTGTGATTGTGGTCGTGTTTTCTCAAGGGTTGAGAGTTTTATTGAGCATCAAGATGCTTGTAACATGGGAAGGGTCCATAATTCAGAATCTCAACCACTACAAACACCAACTGCATGTTTATCAAGAACAGCTTCAAGTCCAAGTCCATCAAGTGAAACAAACTTTACCACATATCCATGGCAAACAAGGCTTCAAGTCATGCAAAAATCAACAAAAGAATCAACAATTTTCATGAACCCTATTACTCCTCTTACTACTATTACACCTCCTTCTCAAACCTTATCCAAGAACAATAAACTTCTATATCCAAACTTGGAACTTCAACTCTCAACCACAAACAACACCATCATGTCTCTGGCACCAGACACACCTTCAATAAGAAGTATCAGTGCTGCAGAGGCTATTCAGAGGTCAACTCAGTTGCATCTTTCAATTGGTTCGTCAAATATGAGTGAGAAAAATGAATCAATTAATAGAAACAACTCAAACTCATCACCTAAAGAGAGTAGCAATAGCAATGAGAAAGTTCAATCAACAACAACAACAACAACAACAACAACAACAAACAACATTGCTTTGGTGAGGGTTCAAGAACAAGCAATGGAACAATTAAGGATAGCTATGGCTGAAAAAGCTTATGCTGAAGAAGCAAGGAAACAAGCAAAGAAACAAATTGAAATGGCTGAACAAGAATTCAATAATGCAAAGAGAATTAGACAACAAGCACAAAGTGAACTTGATAAAGCTTATGGATTAAAACAACATGCAATCAAGCAAATCAATTCAACTATGCTTCAAATCACTTGTCAAGCTTGCAAACAACAATTTCAACATGAAGATAACTCTTTGGTGTTGAGCTATGTTTCCTCAGCTATAACAACTGAAGGTGGTGAAGTAGAAAATGATGATGGAAAAGGCAAAATAACTAACTAA 1422 0.3678 MLANSLSPSSLPSSEPFSCNENGTSSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRVHNSESQPLQTPTACLSRTASSPSPSSETNFTTYPWQTRLQVMQKSTKESTIFMNPITPLTTITPPSQTLSKNNKLLYPNLELQLSTTNNTIMSLAPDTPSIRSISAAEAIQRSTQLHLSIGSSNMSEKNESINRNNSNSSPKESSNSNEKVQSTTTTTTTTTTNNIALVRVQEQAMEQLRIAMAEKAYAEEARKQAKKQIEMAEQEFNNAKRIRQQAQSELDKAYGLKQHAIKQINSTMLQITCQACKQQFQHEDNSLVLSYVSSAITTEGGEVENDDGKGKITN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01821 473 Coils Coil 367 408 - -
Trre12g01821 473 Gene3D Classic Zinc Finger 36 98 - -
Trre12g01821 473 SMART c2h2final6 135 162 IPR013087 -
Trre12g01821 473 SMART c2h2final6 58 80 IPR013087 -
Trre12g01821 473 SMART c2h2final6 99 129 IPR013087 -
Trre12g01821 473 MobiDBLite consensus disorder prediction 310 349 - -
Trre12g01821 473 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Trre12g01821 473 MobiDBLite consensus disorder prediction 1 45 - -
Trre12g01821 473 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Trre12g01821 473 MobiDBLite consensus disorder prediction 1 25 - -
Trre12g01821 473 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Trre12g01821 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Trre12g01821 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 381 IPR031140 -
Trre12g01821 473 FunFam protein indeterminate-domain 12-like 37 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01821 Trre-Chr12 18349123 18352487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01821 21 218 C2H2 Transcription Factor Family AT2G01940 80.383 1.40e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g01821 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01821 K25871 - gmx:100785333 652.129