Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01780 ATGGCCGAACCAAATTCAGTTGAAGGGATTTTGGATTTTTTGAAGAGGAACCGGTTCACACGAGCTGAAGCAGCTTTGCGGAGTGAGCTCAATAACAGTTCTGATGTAAACGGATTCCTTCAGAAGCTTACATTGGAAGAAAAGAACTTGTGTGATGTGTCGCAGAATGATAAGGGGAAGGTCGTGGTAGAAAATCGAGGGTCGGATTCTCGTGATAGTGTTGAAGTTTCTAAAGAATTGATTGTGAAGGAAATTGAGTGTGGGACTGGTAGAAATACTACCGAGAGCAAGTGGAAACATGCCACTCCGGCTGAGGAAAGGAATAAATCTAATGAAGTTGTTGGAACAAGTGGAACAAATTTCACTTTCTTGAAGAGTTCAGAGGACAGTGTGTTTGATTTACACTCATGGAAGATCAATGGTCCTGCGGAGCCATACCAAATTGATGGTGGAAGCAAGGCTAATAATGCTTCGAAGGTCTCAGTATCTCAGCAATCAAAAACTCAAACGAGTGAAGCCTTTGATGCAGTCAAAAGTAATGTAAAAAGCACGGAGGAAAATAACGTTCCCGCTGAGAAAAAACCCTCGTGGCTTGGAAGTAGTGGTAAAGCCTCTATGGAACCAAAGTTTAGCGTTGTCCAAAACAAAGAATCTAAGGAAATTGATCGGCAGCAGCTTAAATTTAGTAGTTCATCACTTAAAGAGAACTTGGCAGATAATGTCTTGTCAAGAGCTGACGAGAATGCAAATTCATCTTCTGACGTATGGAAAGATTGTTCCATCAAGACTGTTTTCCCTTTCTCAAAGGGGGATGTGTCTACAAGCTATAGTAGCTCAAATTATTCAGAAAAAGTAGATGAAAAGAGAAAGCCAGAAATCAGTGATGCGAGGGCTTATATTAAAGAGCAGGTGGATGAAGTGGGGAGAGCTTTTTACCTGGGGAAGTTGCAAGGCAGTTCTGAACAGAATAACATCGGGAGCGTAAGTTTTCCTCTTGCATTGGAGAAGCAAAAGGAAGAGTATCCAAGGCTTCCTCCTGTGAAAATTAAGTCAGATGACAAGCCGTTAACTATTAATTGGAGCGAGAAGTTTGAATCTGATGGATTGGCTGCGAAGCTCGTTAGTGCTGACAGTAACTTACTTATCGGATCATATCTGGATGTTCCTATTGGACAAGAAATAAAAAACGCAGGTTTGAGGAAGGCTACAGGGGGCAGTTGGCTGTCAGTTAGTCAAGGAATATCGGAGGATACCTCTGATCTTGTATCAGGTTTTGCTACAGTTGGTGATGGGTTGAGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCTGATGAATATGATGATGACGACGATGTTGGGTACATGAGACAACCCATTGAGGATGAGGCCTGGTTTTTGGCGCACGAAATCGATTACCCTAGTGACAATGAAAAGGGGACCGGGCATGGAAGCGTTCCAGATCCTCAGGAAAGAGGTCCTACCAAAGATGACGATGATGATCAGTCTTTCGCTGAAGAGGATTCTTATTTCTCTGGAGAGCAATATCTTCAAGCAAAGAATGTTGAGCCGGTCACAGGTTCGGATGATCCTATCGGCATAACGGTTACTAATATGTATGGAAGGGCTAATGGTAATGATTTAATGGCTCAATATGATGGAGAATTGATGGATGTAGAAGAACTGAATCTGATGCATGCAGAACCTGTCTGGCAGGGCTTTGTTCCTCAGACAAATGACCTAATCATGTTGGGAGATGGAAAAGTTCTGAATCACAGTGGAAGATCACGAATTGAGGAAATGGAAGATGATCAGCACGGTTCAGTTAGGTCAATCGGGGTGGGTTTCAACAGTGATGCTGCCGATATCGGCAGTGATGTGCATGGAAGTTTTATTGGTGGTAGCAGTGAAGGGGATTTAGAATATTTCCGTGATCGCGATAGCGGACTTGGGGGATCCAAACACTCTCATCGTGATTTCGGCAAGAATTCTATGGACAAACCATTCAAAAATAAGAAGAAAAATGACAAGATTGAGTCAAATAAATATGTCATTGGAGGCCATAAAGATGCACATTCACAAATAAAAACACATCCTGATGGCAACTTTTCATTTCCTCAATCTCTTAAAGATAGCCAGATGACTCGGGGTGGTTCCAGTAAGTCGCCATGGTTAAATAATTGTAATGCAGATGAAACCGATGACTGCATTAATGCTTTTGAGGAATCTGATGAAATGCTTTCTTCGTGGAGGCAGAAGAGTAGTGATTCTTCACCCGAGAAAAGTTCTAGGGATGAGAATAATGCTCATGCGGTTAGATCCTCGAACTCTTCTCCAACTACTGTCGATAATTACGGGTACGCTGATAAAGAGCATGTCAAGCATGTAAAGGATGATGAAGAGGTTGACATTACAAGGGAAGATGATTTAGGTGTATCACAAGAGGATGAAGAGATTGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAGGCTCAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGATTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGCCGCTATCATGTCACCGAGTATCTGGGATCTGCTGCATTTAGTAAAGCTATACAAGCTCATGATCTGCACACAGGTGTCGATGTTTGTATTAAAATTATAAAGAACAACAAGGATTTCTTTGATCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTTTGCGATTATATGATTATTTCTATTATAGAGAACATTTGTTAATAGTATGTGAACTACTCAAAGCCAATTTATACGAGTTTCATAAATTCAACAGAGAATCAGGAGGGGAAGTGTACTTCACAATGCCGAGATTGCAGTCAATTACCATTCAATGTTTGGAAGCACTTCAGTATTTGCATGGCCTTGGACTAATACATTGTGACTTGAAGCCGGAAAATATTTTGGTTAAAAGCTATAGCCGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACGGATCACCTTTGCTCATATGTTCAGTCCAGGTCCTATCGTGCTCCCGAGGTTATTCTAGGGCTTTCATATGACAAGAAGATTGATATCTGGTCCCTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATGTCTTATTCCAAAATGATTCCCCGGCAACATTACTTGCTAGGGTAATTGGGATCATCGGTCCAATTGGTCAAAGTATGCTAGCAAAAGGACGGGATACATACAAGTACTTCACAAAAAATCACATGCTATATGAGAGGAATCAGGAAAGCAACAGGTTAGAATACCTGATTCCGAAAAAGACATCCTTGAGGCATAGGTTACCGATGGGAGACCAAGGCTTCATTGACTTTGTTGCTCATTTGCTTGAGGTTAACCCAAAGAAGCGACCTTCTGCATCCGAGGCTCTAAAGCACCCGTGGTTATCATACCCTTATGAACCGATATCATCTTGA 3549 0.4145 MAEPNSVEGILDFLKRNRFTRAEAALRSELNNSSDVNGFLQKLTLEEKNLCDVSQNDKGKVVVENRGSDSRDSVEVSKELIVKEIECGTGRNTTESKWKHATPAEERNKSNEVVGTSGTNFTFLKSSEDSVFDLHSWKINGPAEPYQIDGGSKANNASKVSVSQQSKTQTSEAFDAVKSNVKSTEENNVPAEKKPSWLGSSGKASMEPKFSVVQNKESKEIDRQQLKFSSSSLKENLADNVLSRADENANSSSDVWKDCSIKTVFPFSKGDVSTSYSSSNYSEKVDEKRKPEISDARAYIKEQVDEVGRAFYLGKLQGSSEQNNIGSVSFPLALEKQKEEYPRLPPVKIKSDDKPLTINWSEKFESDGLAAKLVSADSNLLIGSYLDVPIGQEIKNAGLRKATGGSWLSVSQGISEDTSDLVSGFATVGDGLSESVDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPTKDDDDDQSFAEEDSYFSGEQYLQAKNVEPVTGSDDPIGITVTNMYGRANGNDLMAQYDGELMDVEELNLMHAEPVWQGFVPQTNDLIMLGDGKVLNHSGRSRIEEMEDDQHGSVRSIGVGFNSDAADIGSDVHGSFIGGSSEGDLEYFRDRDSGLGGSKHSHRDFGKNSMDKPFKNKKKNDKIESNKYVIGGHKDAHSQIKTHPDGNFSFPQSLKDSQMTRGGSSKSPWLNNCNADETDDCINAFEESDEMLSSWRQKSSDSSPEKSSRDENNAHAVRSSNSSPTTVDNYGYADKEHVKHVKDDEEVDITREDDLGVSQEDEEIAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGVDVCIKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQYLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIGQSMLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01780 1182 MobiDBLite consensus disorder prediction 647 697 - -
Trre12g01780 1182 FunFam Serine/threonine-protein kinase ppk15 950 1174 - -
Trre12g01780 1182 FunFam Putative serine/threonine-protein kinase dyrk2 865 952 - -
Trre12g01780 1182 Gene3D Phosphorylase Kinase; domain 1 865 952 - -
Trre12g01780 1182 Pfam Protein kinase domain 871 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01780 1182 MobiDBLite consensus disorder prediction 93 113 - -
Trre12g01780 1182 MobiDBLite consensus disorder prediction 147 205 - -
Trre12g01780 1182 SUPERFAMILY Protein kinase-like (PK-like) 860 1175 IPR011009 -
Trre12g01780 1182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 997 1009 IPR008271 GO:0004672|GO:0006468
Trre12g01780 1182 MobiDBLite consensus disorder prediction 151 186 - -
Trre12g01780 1182 SMART serkin_6 871 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01780 1182 ProSiteProfiles Protein kinase domain profile. 871 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01780 1182 MobiDBLite consensus disorder prediction 474 505 - -
Trre12g01780 1182 MobiDBLite consensus disorder prediction 647 729 - -
Trre12g01780 1182 Coils Coil 813 843 - -
Trre12g01780 1182 MobiDBLite consensus disorder prediction 698 729 - -
Trre12g01780 1182 MobiDBLite consensus disorder prediction 748 790 - -
Trre12g01780 1182 PANTHER DUAL SPECIFICITY PROTEIN KINASE 406 1173 - -
Trre12g01780 1182 CDD PKc_DYRK_like 871 1173 - -
Trre12g01780 1182 MobiDBLite consensus disorder prediction 770 785 - -
Trre12g01780 1182 Gene3D Transferase(Phosphotransferase) domain 1 925 1173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01780 Trre-Chr12 17913144 17920719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01780 870 1168 MAP Kinase Gene Family AT5G19010 31.975 1.55e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Trre12g01780 Pkinase 4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01780 - - mtr:25496682 2192.93