Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01768 ATGAATGCTGCAACGAAGAAGAAAATCCAGAAGAAGTGCAAAATCCGAGGCTACAATATCAAAATCGAAGCTCTTGACGAGATTATCTCCTTCGCTACTCGCTTTGAACCTACCGAACAAGATGAAGCCATCGATCTCCTCCTCGATGGACTCGAAAACGAATCTTTGAAATCTACTATAATCGACTTGGAGCCGGTGCAACGAGCGGTGAATCTGTTACTGGAAGCCGACGCAGAGGAGGAAATTAATAATAACTTTGCTTCATCTTCTTCTTCTTCTTCTGCCATTGCTGTGATTAATGTGTTCGACATTCCTAGATATAAATATGATGCTATCCGAAGGAATTTCTACCAACACCCAGGAAGCTTACCTGTACATGGGGACCCGCAAGCAAAATCCGCACTATACAGGGATAGGTTTTTGTTGTTATCTCAGAGACTTTCTCGTCACCAAGATTTTTCGAGGCCGGCTTTTGAGTCCGAACTTTCACAATTCCGGAGTTGTGAGATATCTCCTATTCAATCTCTGGTTGGGCAAAAAGGTAGAAGATGGGTAATGGGAGTAATTTCTCAGCTGGAGGATGGCCATTTTTATTTGGAAGACCTTACTGCTTCAGTTGAAATCAATTTATCTGATGCTAAGATTACTACAGGATTCTTCTTAGAGAATACCATAGTTGTGGCCGAAGGCGAGATGCTCGCAGAGGGTATTTTTAAGATTTTTACATGTGGGTTTCCACCATTAGAGGACAGAGATAAATCACTTCAAGTGCTTGCAGGGCATGACTTTTTTGGCGGTGGTACTTTTACAAAAGAAGAAACGATTAGGATGGAAGAAATGGAGAAAAGAGCAGTCAATGACATGTTTGTCATATTATCTGATATTTGGTTAGACAAAGAAGAGGCTATAGGAAAGATAGAGACTGTTCTTGATGGTTTTGAGCATGTGGAAGTGGTTCCTTCCTTATTTGTTTTTATGGGAGACTTCTGTTCTCAACCATGTAGCCTTGCATTTAAATCTTATTCAAGCCTAAGGTCCCAATTTGGCAAGCTAGGGCAAATTATTGCTGCCCGTCCACGGTTAAAAGAGAACAGCCGATTTCTTTTTATTCCAGGTCCTGGTGATGCAGTTCCTTCGACAGGTCTTCCCAAGTGTCCTCTACCTAAATATTTAGTTGAGGAGCTCCAAAAGTATATTCCCGATGCCATATTCTCAAGCAATCCCTGCAGGGTAAAATTCTATACACAAGAAATTGTATTTTTCCGCCAGGATCAGCTGTATACAATGCGCCGTTCTTGTTTAATGCCACCTTCTGAGACAGAAACTGTTGATCCTTTTCAGCATCTTGTTGCCACCATAACTCATCAGAGTCATCTATGTCCATTCCCTTTAACTAAAGAACCCATCGCATGGAATTATGACCATTCCCTTCATTTATATCCAACTCCGCACACGATAGTTTTAGGAGACAGAAGTCCCCAGAAAGCTTTTAAGTACACAGGAATCACTTGTTTCAATACTGGATCCTTCTCGATGGATAGCACATTTGTAGTATACCGTCCTTGCAATCAGGAAGTTGAATTGTCATCATTGTGA 1596 0.4129 MNAATKKKIQKKCKIRGYNIKIEALDEIISFATRFEPTEQDEAIDLLLDGLENESLKSTIIDLEPVQRAVNLLLEADAEEEINNNFASSSSSSSAIAVINVFDIPRYKYDAIRRNFYQHPGSLPVHGDPQAKSALYRDRFLLLSQRLSRHQDFSRPAFESELSQFRSCEISPIQSLVGQKGRRWVMGVISQLEDGHFYLEDLTASVEINLSDAKITTGFFLENTIVVAEGEMLAEGIFKIFTCGFPPLEDRDKSLQVLAGHDFFGGGTFTKEETIRMEEMEKRAVNDMFVILSDIWLDKEEAIGKIETVLDGFEHVEVVPSLFVFMGDFCSQPCSLAFKSYSSLRSQFGKLGQIIAARPRLKENSRFLFIPGPGDAVPSTGLPKCPLPKYLVEELQKYIPDAIFSSNPCRVKFYTQEIVFFRQDQLYTMRRSCLMPPSETETVDPFQHLVATITHQSHLCPFPLTKEPIAWNYDHSLHLYPTPHTIVLGDRSPQKAFKYTGITCFNTGSFSMDSTFVVYRPCNQEVELSSL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01768 531 Gene3D - 2 72 - -
Trre12g01768 531 Pfam DNA polymerases epsilon N terminal 4 71 IPR024639 -
Trre12g01768 531 PIRSF DNA_pol_epsilon_2 1 531 IPR016266 GO:0003677|GO:0006261|GO:0008622
Trre12g01768 531 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 1 531 IPR016266 GO:0003677|GO:0006261|GO:0008622
Trre12g01768 531 Pfam DNA polymerase alpha/epsilon subunit B 289 494 IPR007185 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01768 Trre-Chr12 17775712 17780040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01768 16 500 Core DNA Replication Machinery Family AT5G22110 64.815 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01768 K02325 - zju:107419650 804.668