Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01766 ATGGTGATCTCATCAGCTGTCACACACCCAGATGAACAAAGACAAAACATAACATGTACTTTCGCTTCAAGATACATGCGTGAATCTGTTCCAAAGTTCAAGTTGCCAGAGAGTTCTATACCAAAAGATGCAGCATATCAGATAATAAATGATGAGTTGATGTTAGATGGAAAACCAAGGCTTAATTTGGCTTCATTTGTGACTACTTGGATGGAACCTGAATGTGATAAGCTTATCATGGATTCACTTAATAAGAACTATGTTGATATGGATGAGTACCCTGTCACTACTGAGCTTCAGAACCGGTGTGTGAATATAATAGCGCATCTTTTCCATGCTCCAATTGGTGAAGAGGAAACTGCTGTAGGTGTTGGAACCGTAGGGTCATCAGAGGCAATAATGTTAGCTGGTTTAGCTTTTAAACGGAAATGGCAGACAAAGAGAAAAGCAGAAGGCAAACCTTATGATAAGCCCAACATTGTTACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCTAGGTACTTTGAGGTTGAGCTAAAGGAAGTGAAACTCACAGAGGGATACTATGTGATGGATCCATTGAAAGCAATTGAAATGGTAGATGAGAACACCATCTGTGTTGCCGCCATTTTAGGTTCAACGCTGACAGGAGAGTTTGAAGACGTGAAGCTTCTTAACGAACTTCTTACTATAAAGAACAAAGAAACAGGATGGGATACGCCAATTCATGTAGATGCTGCCAGTGGAGGGTTTGTTGCTCCATTTCTCTACCCTGATCTCGAATGGGATTTTCGTTTGCCGTGGGTGAAGAGTATCAATGTTAGCGGTCATAAGTACGGTCTTGTTTACCCTGGTATTGGTTGGGTTGTCTGGAGGAATAAAGATGACTTGCCGGATGATCTTGTTTTTCATATCAATTATCTTGGATCTGATCAGCCAACTTTCACATTGAATTTCTCCAAAGGATCGAGTCAAATCATTGCTCAATACTACCAATTTATTCGACTTGGCTTTGAGGGCTACAAAAATGTCATGCAAAATTGCTTGGAGAACACAAGAGTTTTGAAGGAAGGAATCGAGAAAACAGGAAGGTTTAAAATCGTCTCCAAAGATATAGGCGTACCACTCGTAGCCTTCTCTTTGAAAGACAGTAGCAAACACACTGTCTTCGAAATAGCCGACCATTTGAGAAAATACGGGTGGATAGTTCCAGCCTATACAATGCCAGCAGACGCACAACACATCGCAGTCCTCCGAGTAGTGATTAGGGAGGATTTCAGCTGTAGCTTGGCTGAGAGACTTGTTTCTGACATAGAAAAAGTTGTGAATCATTTGGATACACTTCCTAGTGCTCTCTCCTCGAAAAGTGCTCATGTCGCGGTTATCGCGAGTGAGACAAGTAAGGAAGTTAAGAAAGATATTACAGAGACTCAAGCTGAGATTTCTAGGTATTGGAAGAAGCTTGTGGATGGCAAGAGAGTTGGAGCATGCTAG 1500 0.4153 MVISSAVTHPDEQRQNITCTFASRYMRESVPKFKLPESSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFHAPIGEEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPLKAIEMVDENTICVAAILGSTLTGEFEDVKLLNELLTIKNKETGWDTPIHVDAASGGFVAPFLYPDLEWDFRLPWVKSINVSGHKYGLVYPGIGWVVWRNKDDLPDDLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMQNCLENTRVLKEGIEKTGRFKIVSKDIGVPLVAFSLKDSSKHTVFEIADHLRKYGWIVPAYTMPADAQHIAVLRVVIREDFSCSLAERLVSDIEKVVNHLDTLPSALSSKSAHVAVIASETSKEVKKDITETQAEISRYWKKLVDGKRVGAC 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01766 499 Gene3D - 364 451 - -
Trre12g01766 499 FunFam Glutamate decarboxylase 364 451 - -
Trre12g01766 499 Gene3D - 1 68 - -
Trre12g01766 499 FunFam Glutamate decarboxylase 7 68 - -
Trre12g01766 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Trre12g01766 499 SUPERFAMILY PLP-dependent transferases 9 447 IPR015424 -
Trre12g01766 499 CDD DOPA_deC_like 62 442 - -
Trre12g01766 499 Gene3D - 69 363 IPR015421 GO:0003824
Trre12g01766 499 FunFam Glutamate decarboxylase 69 363 - -
Trre12g01766 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre12g01766 499 NCBIfam glutamate decarboxylase 20 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01766 Trre-Chr12 17763968 17767548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01766 1 495 Calmodulin-binding Proteins AT2G02010 77.576 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01766 K01580 - gmx:100796475 892.878