Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01763 ATGGCCGAGTTTGGGAAAGATGAAGTGCCGATTCTGTCAGATACTTTTCCAAAACAATCAAATGAACCTGATGATTCCAAATTCCAGAGTCATGTATCTAGGACGCGAAGTGTATCGATTTCCATTCCCATGTTTCCTATGGATCCATATGAAAGAGATACTAATCTTAGAGGACACACTGGTCCTCTAAGGAGTAAAAGAAAAACACCATTTAGTCCAATGAGTGGTCCATTATATGTTACTCATAGACCCGGAAATATTTCCTGGCAAAATATGGTCGCGCCGAGGAGCAATGCAGAGGAAAGTAAGACAGAAAAGTTTCCTTTATGTAACATCATAAGTGGACATGATTTGCAGAATAACTATGCTAGCAAAAATGAACATTTAGTAAGGTCTGGTCCATTGGGAATGTGTAATGATCCATACTGTACAACTTGTCCAACTTACTTTAAGGCTACTCAACAAATGGATTCGAAAAATTCGGGTTTGTTCAATCCTAAGAATGCCTTCTATGGTGATGCAAAGGATTGGGCAAGAAGAATTTTTGCTTTCTTTATTCCAAATGAACCTAGAGTTATGAATCCACATAATAAACTTGTACAACAATGGAATAAATTTTTCGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCATTATTTTTATTCTTGCTCTCTGTGAATAAGGAACATAAATGTATTGTTATTGATTCGACAATGACAACAGCGCTTATTTTACTTAGAAGTACGAATGATTTCATACATTTCATAAATATTATTCTTCAGTTTAGGTTGGCTTATATAGCTCCCGAGTCTAGGGTGGTTGGTGCCGGAGAGTTGGTAGACCATCCTAAGAAAATAGCTCTTCACTATCTCCAGACATATTTTCTTTTTGACTTATTTGTTGTACTTCCACTTCCTCAGATAATGATATTGTTTTTCCTACCAAATCATGCGAAGAATCTTTTGCGTGGCGCTGTCCTTGCTCAGTACATTCCCAGATTGTGTAGATTTCTTCCTATGCTAATTTCTCCAACCGGATTCATATTTGAGTCGCCATGGGCAAGTTTCTTCATAAATCTTTTTACCTTTATGCTATCTGGCCATGTTGTTGGGTCATGGTGGTATCTCTTCGGTTTGCAGAGGGTTAATCAATGTCTACGAAATGCGTGCAAGAAAACATATTTTCATGGATGCTCAAAACTCATTGATTGTGGACATGGAGGCAGTGAGGACTATCATCAAAATGAAACAAATTGGATTAATTGGAGGAAAAATGACAATGCGAGTGCTTGTTTTACAGAAGATGGTTTTGAATATGGGATCTATCTTAAAGCTGTCAACCTTACTACAAAACATAATGTGCTTACAAGATATGTATATTCATCATTTTGGGGATTTCAGCAAATTAGCACTCTAGCTGGAAATTTGTCACCAAGCTATTTTATTGGGGAAGTCCTTTTTATTATGGGAATAATCGGATTAGGACTCTTGCTTTTTGCTCTTCTCATTGGTAACATACAAAACTTTCTTCAGGCTCTTGGAAGAAGGAGGCTAGAAATGTCACTTAGACAACGCGATGTTGAGCAATGGATGAGCCATAGGCGCTTAGCACAAGATCTGAGAAAGAGAGTGCGACAAGCAGAACGTTATAATTGGGCTGCAACGAGAGGAGTGAATGAAGAAATACTAATGGAGAATTTACCTGAAGATCTTCAAAGGGACATCAGACGTCATCTCTTTAACTTTGTTAAGAAGGTTCGAATTTTTTCCTTGATGGATGAGCCGATATTGGATGCCATTTGTGAGAGACTAAGACAAAAAATATATATCAAAGGAAGCAAAATTTTGTATGATGGTGGCTTGGTAGAAAAAGTGGTTTTTGTTGTTCGTGGAAAATTGGAAAGTATTGGTGAAGATGGAATTAGAGTTCCTCTATCTGAAGGCAACTTTTGTGGTGAAGAACTTCTGACATGGTGTCTCGAGCATGCTTCGGGAAACAAAGGTTATGGAAAAACAAGAATTCCAAGACAAAGGTTGGTAATTAGCAATAGGACTGTATTGTGCCTAACAAATGTAGAGGCATTTTCAATTAGAGCAGCGGACCTTGAAGAAGTTACAAGCATTTTTGCAAGATTCTTGAGGAATCCTGGTGTTCAAGGAGCCATAAGGTATGAATCACCTTACTGGAGATGTCTTGCAGCAACGCGCATCCAAGTTGCATGGAGATACAAAAAGAAACGTCTTTGTCGCACTACACTTCACAATCAGATAGCAAAGCATTAA 2286 0.3797 MAEFGKDEVPILSDTFPKQSNEPDDSKFQSHVSRTRSVSISIPMFPMDPYERDTNLRGHTGPLRSKRKTPFSPMSGPLYVTHRPGNISWQNMVAPRSNAEESKTEKFPLCNIISGHDLQNNYASKNEHLVRSGPLGMCNDPYCTTCPTYFKATQQMDSKNSGLFNPKNAFYGDAKDWARRIFAFFIPNEPRVMNPHNKLVQQWNKFFAICCLVAIFVDPLFLFLLSVNKEHKCIVIDSTMTTALILLRSTNDFIHFINIILQFRLAYIAPESRVVGAGELVDHPKKIALHYLQTYFLFDLFVVLPLPQIMILFFLPNHAKNLLRGAVLAQYIPRLCRFLPMLISPTGFIFESPWASFFINLFTFMLSGHVVGSWWYLFGLQRVNQCLRNACKKTYFHGCSKLIDCGHGGSEDYHQNETNWINWRKNDNASACFTEDGFEYGIYLKAVNLTTKHNVLTRYVYSSFWGFQQISTLAGNLSPSYFIGEVLFIMGIIGLGLLLFALLIGNIQNFLQALGRRRLEMSLRQRDVEQWMSHRRLAQDLRKRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHLFNFVKKVRIFSLMDEPILDAICERLRQKIYIKGSKILYDGGLVEKVVFVVRGKLESIGEDGIRVPLSEGNFCGEELLTWCLEHASGNKGYGKTRIPRQRLVISNRTVLCLTNVEAFSIRAADLEEVTSIFARFLRNPGVQGAIRYESPYWRCLAATRIQVAWRYKKKRLCRTTLHNQIAKH 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01763 761 ProSiteProfiles cAMP/cGMP binding motif profile. 589 657 IPR000595 -
Trre12g01763 761 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 749 - -
Trre12g01763 761 Gene3D Helix hairpin bin 517 581 - -
Trre12g01763 761 CDD CAP_ED 589 706 IPR000595 -
Trre12g01763 761 MobiDBLite consensus disorder prediction 1 77 - -
Trre12g01763 761 Gene3D - 196 514 - -
Trre12g01763 761 Gene3D Jelly Rolls 587 712 IPR014710 -
Trre12g01763 761 Pfam Ion transport protein 205 517 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre12g01763 761 SUPERFAMILY Voltage-gated potassium channels 195 517 - -
Trre12g01763 761 SUPERFAMILY cAMP-binding domain-like 517 712 IPR018490 -
Trre12g01763 761 SMART cnmp_10 589 725 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01763 Trre-Chr12 17726143 17732283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01763 7 669 Ion Channels AT3G17700 58.772 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01763 K05391 - gmx:100795955 1168.68