Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01762 ATGATATTGATTGTTCTACCAAATTCCTTGGGGTCTTCAGGAGCAAATTTTGCTATGAATGTGATCTTTGTACAGTATATTCTCAAATTCTTCAGATTTTTGCCTCTGCTAATTGGCATGTCTCCAAGTGGAATCATATTAGAGACAGTCTGGGGAAATTTAATTGTAAATCTTCTCAGGTTTATGTTTGCTGGTCATATTGTTGGTTCATGCTGGTACCTCTTTGGTCTACAGAGGGTTAACCAATGTTTGCGAGATGCCTGCCATCATTCTAACATACTTGGATGCATGGACTTGATTGATTGCGATTCTAAAGTGAGGAATATATCAGCTACTACACTGTGGAGTGAATATAAGGGTGCTAGTGCTTGTTTGAATCCCACGTCTGGTGCTTTTTCTTATGGAATCTATGCCAATGCTATTCCACTTACTATAGAAACTAAGTTGATTAACAAATATGTGTATGCACTCTTTTGGGGACTCCAGCAAATCAGTACTCTAGCGGGTAATCAAACTCCAAGCAATTTTGTTTGGGAAGTCCTCTTTACAACGTTTATCATAGTATTGGGACTCTTTTTTCTTGCTATTCTCATTGGAAATATGCAGAACTATATTCAGTCTCATGGATGGAGGAACCTAGAAATGATACAAAGACGCCGTGATGCTGAGAAATGGATGAGCAATCGTTGCTTACCAGAACTTCTCAAAGAGAGAGTACGCCAGGCTCAACAGTTTAGTTGGTATGCAACAGGGGGTGTTACTGAGAAAATGGTTCTCGAGAATTTGCCAGAAGATCTCCTGATAGACATACGGCGTCATCTCTTCAATTTTATTAAAAAAGTTCGAATTCTTCAGCGTATGGATAGGGATGATGAGTCTAATTTCTTAGATGCCATTCATGAGCGACTAATACATATGACATACATCCAAGGAAGTAGAATTTTCAGTCAGGGTGGTCTTATACAGAAGACGGTGTTTGTTGTGCGTGGAAAATTGGAGAGCATCGGAGAAGATGGGATTCCGGTTCCGTTATTTGAAGGGGATGTTTGTGGTGAAGAACTTCTAGCATGGTATATTGAGCAGTCTTCTGAAATCAGAGGTAAAAAAGTAAAGCTTCAAAGACAAGGATTGATTAGTGACAGAACAGTAAGATGCTTAACCCATGTGGAGGCATTTTTACTTCGCATTGAAGACATCGAAGAAATCACAACTCTTTTTGCAAGATTGTTGCAGAGTCCGCATGTTCAAGTAGTCATAAGGTATGAATCACCTTATTGGAGATCACTTGCAGCAAACAAAATTCAGGTTGCTTGGAGATATAGGAAGAAACGTCTAAGCAGGGGCGAAGCTATGCATGTTAATGGCTCTGTCTAG 1374 0.3959 MILIVLPNSLGSSGANFAMNVIFVQYILKFFRFLPLLIGMSPSGIILETVWGNLIVNLLRFMFAGHIVGSCWYLFGLQRVNQCLRDACHHSNILGCMDLIDCDSKVRNISATTLWSEYKGASACLNPTSGAFSYGIYANAIPLTIETKLINKYVYALFWGLQQISTLAGNQTPSNFVWEVLFTTFIIVLGLFFLAILIGNMQNYIQSHGWRNLEMIQRRRDAEKWMSNRCLPELLKERVRQAQQFSWYATGGVTEKMVLENLPEDLLIDIRRHLFNFIKKVRILQRMDRDDESNFLDAIHERLIHMTYIQGSRIFSQGGLIQKTVFVVRGKLESIGEDGIPVPLFEGDVCGEELLAWYIEQSSEIRGKKVKLQRQGLISDRTVRCLTHVEAFLLRIEDIEEITTLFARLLQSPHVQVVIRYESPYWRSLAANKIQVAWRYRKKRLSRGEAMHVNGSV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01762 457 SUPERFAMILY cAMP-binding domain-like 211 405 IPR018490 -
Trre12g01762 457 SUPERFAMILY Voltage-gated potassium channels 4 206 - -
Trre12g01762 457 Pfam Ion transport protein 14 207 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre12g01762 457 Gene3D Jelly Rolls 281 408 IPR014710 -
Trre12g01762 457 ProSiteProfiles cAMP/cGMP binding motif profile. 283 366 IPR000595 -
Trre12g01762 457 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 446 - -
Trre12g01762 457 Gene3D Helix hairpin bin 213 275 - -
Trre12g01762 457 Gene3D - 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01762 Trre-Chr12 17699622 17709395 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01762 1 363 Ion Channels AT3G17700 54.768 9.29e-132 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01762 K05391 - ccaj:109789004 573.548