Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01760 ATGAGTCATTTTGATAAAGATGAAATTCCGATGCTGTCAGAAAGACGTACACAACGATCTGATGAACCTCAAGATTCTACATTCCGAAGAAACATATCGAGGACACGAAGTGCTTCAATTTCTATTCCTATGGCTTCTCTGGATCCATATGAGAGACAGCCGAATCTTGTCGGACATACTGGTCCGCTTCGTACTGCGAGGAAGACTCCGTTGGGGCAAATGAGTGGTCCATTATATGCAACTCCTGCAACTGGAAATCCTTTTCAGAATAGTATAGTAGTGGCCGGAAACAAAGTAGGAGAGAACAAGACAGAGAAGTTTGATGGCACAGATGAATATCGTTGGAATGATAATTACTACGACAAAAAAAATGAGCATTTGTTGAGGTCTGGACAACTTGGAATGTGTAATGATCCTTATTGCACTACTTGCCCTACTTACTTTAAGGTTTCTCAGCAAAGAAAACCAATAGCTCCCAATATATTTGATCCCAAGTTCCACAATTCTCTTTATGGCGACGCCAAAGGTTTTGGAAGAAAACTTTTATCTTTCTGCTCTTCATGCATTCCTGGAGTTATGAACCCTCATACTAAAGTTGTACAACATTGGAACCAGTTTTTGGCCATAACTTGCATAATCTCAATTTTTGTTGATCCATTATTTTTCTTCTTAATATATGTGAACGAGGATGATAAATGTATTGTTATCAACTGGAGAATGGCAAATATACTTGCTGTAATTAGAAGCATAACTGATATTGTGTATTTCTTGAACATTCTTCTCCAGTTTAGGTTGGCTTATATTTCTCCCGAGTCAAGGGTGGTTGGAGCTGGTGATTTAGTTGACCATCCCATGAAAATTGCTCTTAATTACTTTTGGGGTTATCTTTGGCTTGACTTATTTGTTGTATTACCTCTTCCTCAGATAATGATATTGGTTGTCCTACCAAGTACCTTGGGGTATTCAGGAGCAAATTATGCTAAGAATCTTCTACGTCTAGCGATCCTTATACAGTATATTCCCAGATTATTCAGATATTTGCCTCTGCTAATTGGCCAGTCTCACACTGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTTTTATTCTATCTGGTCATGTTGTTGGTTCATGCTGGTACCTCTTCGGTCTACAGAGGGTTAACCAATGTCTGCGAAATGCCTGCAAGCGTACTTTTCTACCTGATTGCATGGGGTTGATTGACTGTAATGCGAAGGGTACATCAACTAATTGGACCAATGATGAGGGTGCCAAGGCTTGTTTGAGTACCACATCCGGTACTTTTCCTTATGGAATCTATGAAAAAGCTGTGCCACTTACTATAGAAACTGACCTGCTCAACAAATACGTGTATGCACTTTTTTGGGGATTCCAGCAAATCAGTACTCTAGCTGGTAATCAAATCCCAAGCTATTTTATGTGGGAAGTCCTCTTTACAATGTCCATCATAGGATTGGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGTTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGATCTCAAAAAGAGAGTACGACAGGCTGAACGGTATAGTTGGGCTGCAACAAGAGGTGTTCCTGAGAAAATGGTTCTCGAGAATTTGCCAGAAGATCTCCAGACAGACATACGGCGTCATCTCTTCAAATTCGTTAAAAAAGTTCGAATATTTTCCCTGATGGATGAGGAGGAGCCTATCTTAGATGCCATTCGTGAACGACTAATACAGACAACATACATCAAAGGAAGTAAAATTTTGAGTCAGGGTGGTCTTGTACAGAAGATGGTGTTTATTGTGCGTGGAAAATTGGAGAGCATCGGAGAAGATGGGATTCCAGTACCGTTATCCGAAGGGGATGCTTGTGGCGAAGAACTTTTAAGATGGTATCTTGAACAGTCTTCTGAAAACAAAGAAGGTAAAAAAGTAAAGCTTCAAGGACAAGGTTTGACCAGTGACAGAACAGTAAGATGCTTAACCAATGTGGAGGCATTTTCACTCCGCACTAAAGACATTGAAGAAGTCACAACTCTTTTCGCAAGATTCTTGAGGAGCCCTCGTGTTCAAGGAGTCATAAGGTATGAATCACCATATTGGAGATCACTAGCAGCAAACAGAATTCAGGTTGGATGGAGATACAGGAAGAAGCGTCTAAGTCGAGCTAATACCACACAAAATGATTATCAAACATCAAAATCATAG 2307 0.4031 MSHFDKDEIPMLSERRTQRSDEPQDSTFRRNISRTRSASISIPMASLDPYERQPNLVGHTGPLRTARKTPLGQMSGPLYATPATGNPFQNSIVVAGNKVGENKTEKFDGTDEYRWNDNYYDKKNEHLLRSGQLGMCNDPYCTTCPTYFKVSQQRKPIAPNIFDPKFHNSLYGDAKGFGRKLLSFCSSCIPGVMNPHTKVVQHWNQFLAITCIISIFVDPLFFFLIYVNEDDKCIVINWRMANILAVIRSITDIVYFLNILLQFRLAYISPESRVVGAGDLVDHPMKIALNYFWGYLWLDLFVVLPLPQIMILVVLPSTLGYSGANYAKNLLRLAILIQYIPRLFRYLPLLIGQSHTGFIFESAWANFIINLLIFILSGHVVGSCWYLFGLQRVNQCLRNACKRTFLPDCMGLIDCNAKGTSTNWTNDEGAKACLSTTSGTFPYGIYEKAVPLTIETDLLNKYVYALFWGFQQISTLAGNQIPSYFMWEVLFTMSIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLKKRVRQAERYSWAATRGVPEKMVLENLPEDLQTDIRRHLFKFVKKVRIFSLMDEEEPILDAIRERLIQTTYIKGSKILSQGGLVQKMVFIVRGKLESIGEDGIPVPLSEGDACGEELLRWYLEQSSENKEGKKVKLQGQGLTSDRTVRCLTNVEAFSLRTKDIEEVTTLFARFLRSPRVQGVIRYESPYWRSLAANRIQVGWRYRKKRLSRANTTQNDYQTSKS 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01760 768 Gene3D Jelly Rolls 590 716 IPR014710 -
Trre12g01760 768 Pfam Ion transport protein 203 520 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre12g01760 768 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 136 757 - -
Trre12g01760 768 CDD CAP_ED 592 710 IPR000595 -
Trre12g01760 768 Gene3D Helix hairpin bin 519 584 - -
Trre12g01760 768 MobiDBLite consensus disorder prediction 1 29 - -
Trre12g01760 768 Gene3D - 204 517 - -
Trre12g01760 768 ProSiteProfiles cAMP/cGMP binding motif profile. 594 662 IPR000595 -
Trre12g01760 768 MobiDBLite consensus disorder prediction 1 46 - -
Trre12g01760 768 SUPERFAMILY cAMP-binding domain-like 520 713 IPR018490 -
Trre12g01760 768 SUPERFAMILY Voltage-gated potassium channels 195 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01760 Trre-Chr12 17664540 17670777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01760 2 672 Ion Channels AT3G17700 58.651 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01760 K05391 - ccaj:109789004 1125.54