Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01741 ATGAACCTATTAGATGCAATTTGTGAGAGACTAAGACAGAAGACATACATAAATGGAAGTAGAATTATGAGTCAAGGTGGTGTAGTTGAGAAGATGCTGTTTATTGTTCGCGGAAAATTGGAGAGTATTAATGGCGAGAATGGAATTGGAGTTTCTTTATCCGAAGGCGATGCTTGTGGTGAAGAACTTCTTACATGGTACCTTGAACATTCTTCTGTTAGCAAAGATGGTAAAAAAGTAAAGGCTTCCAGGACAAAGGTTAATTAG 267 0.3745 MNLLDAICERLRQKTYINGSRIMSQGGVVEKMLFIVRGKLESINGENGIGVSLSEGDACGEELLTWYLEHSSVSKDGKKVKASRTKVN 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01741 88 CDD CAP_ED 3 64 IPR000595 -
Trre12g01741 88 SUPERFAMILY cAMP-binding domain-like 3 76 IPR018490 -
Trre12g01741 88 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 82 - -
Trre12g01741 88 Gene3D Jelly Rolls 1 88 IPR014710 -
Trre12g01741 88 ProSiteProfiles cAMP/cGMP binding motif profile. 1 64 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01741 Trre-Chr12 17407214 17407818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01741 3 74 Ion Channels AT3G17700 63.889 2.92e-25 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01741 K05391 - lja:Lj1g3v2646140.1 138.658