Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01718 ATGAGGCATCGTCGCTTACCTGAAAATCTAAAAAGGAGAGTACGACAGGATGAAAGATACAATTGGGCTGCAACAAGAGAAACACTTATTGTAAATTTGCCGGAAGATCTTCAGATTGACATTAGGCGTCATCTTTTCAATTTTATTAAGAAAATTCGGATTTTCTCTCTGATGGATGAGCCTATTTTAGATGCAATTTGTGAGAGACTAAGACAGAAGACATACATAAATGGAAGTAGAATTATGAGTCAAGGTGGTGTAGTTGAGAAGATGGTGTTTATCGTTCGTGGAAAATTGGATAGTATTAATGGCGAAAATGGAATTGGAGTTTCTTTATCCGAAGGAGATGCCTGTGGTGAAGAACTTCTTACATGGTATCTTGAACATTCTTCTGTGGGCAAAGTAAGGCTTCCAGGACAAAGGTTAATTAGCAACAAGACAGTAAAGTGCTTAACAAATGTGGAAGCTTTTTCACTAAGAGCTGCAGATCTTGAAGAAGTTACAACCATTTTCATGAGATCCTTTAGGAATTTTCTTGTTCAAGGACCTTTAAGGTATGAATCACCTTATTGGAGATCTCTTGCAGCAACCAGAATTCAGGTTGCATGGAGATATTGGAAGAAACGTCAAAAGTTATCAGATCAAACATTGAAGTTGTAG 660 0.3727 MRHRRLPENLKRRVRQDERYNWAATRETLIVNLPEDLQIDIRRHLFNFIKKIRIFSLMDEPILDAICERLRQKTYINGSRIMSQGGVVEKMVFIVRGKLDSINGENGIGVSLSEGDACGEELLTWYLEHSSVGKVRLPGQRLISNKTVKCLTNVEAFSLRAADLEEVTTIFMRSFRNFLVQGPLRYESPYWRSLAATRIQVAWRYWKKRQKLSDQTLKL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01718 219 Gene3D Jelly Rolls 52 173 IPR014710 -
Trre12g01718 219 SUPERFAMILY cAMP-binding domain-like 1 178 IPR018490 -
Trre12g01718 219 ProSiteProfiles cAMP/cGMP binding motif profile. 54 123 IPR000595 -
Trre12g01718 219 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 211 - -
Trre12g01718 219 CDD CAP_ED 54 167 IPR000595 -
Trre12g01718 219 Gene3D Helix hairpin bin 1 46 - -
Trre12g01718 219 ProSiteProfiles IQ motif profile. 192 219 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01718 Trre-Chr12 17017898 17019659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01718 1 138 Ion Channels AT3G17700 64.789 4.17e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01718 K05391 - gmx:112997782 330.102