Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01710 ATGGAGTATCACAGTGGAGGAAGTGGGTCACCTGGTGATCATCATCACCATCATCATCACCATGATGGTTCTTCTGATTCTCAGAGAAGAAAGAAACGTTACCACCGTCACACTGCTAATCAGATTCAAAGACTTGAAGCTATGTTCAAGGAGTGTCCACATCCTGATGAGAAACAAAGATTGCAGTTAAGCAGAGAATTAGCCTTGGCTCCTAGACAGATCAAATTTTGGTTTCAGAATAGAAGGACTCAGATGAAGGCACAGCATGAGAGAGCTGATAATTGTCAACTAAGGGCAGAGAATGACAAGATAAGATGTGAGAATATTGCTATAAGGGAAGCCCTTAAAAATGTGATCTGCCCCTCTTGTGGTGGACCTCCAATCAATGATGATTGTTATTTTGATGAACAAAAATTGAGGCTTGAAAATGCTCAACTCAAAGAAGAGCTTGATAAAGTATCAAGCATTGCTGCGAAATACATAGGAAGACCAATTTCACAGCTTCCACCAGTAACACCAATTCACATATCATCATTGGATTTATCAATGGGAAGTTTTGGTGGACATGGAATGGGTGGAGGACCATCACTCGATCTCGATCTTTTGCCGGGAAGTTCATCAACAATGCAAAATCTTCCTTACCAACCACCTTGTCTTTCTGAAATGGAAAAGTCACTCATGTCTGAGATTGCGACAAATGCTATGGACGAATTGGTTAGGCTTTTGCAGACTGATGAGCCTTTGTGGATGAAATCAAATACTGATGGGAGAGATCTTCTTAATCTTGATACCTATGATAGAATGTTTCCAAAGGCTAATAATCGGTTGAAGAATCCGAATATTCGTACCGAAGCTTCTAGGGATTCCGGTGTTGTCATCATGAATGGCTTAACTTTGGTTGAAATGTTTATGGATCATGACAAGTGGATGGAGCTATTTCCTACTATTGTTGCAATGGCAAAGACTATTGAAGTTATAGCTTCTGGAATGATCGGTGGACACAGTGGTTCATTGAAACTGATGTATGAAGAGTTGCAAGTGCTGTCACCACTTGTTCCGATTCGAGAATTTTACTTCCTTCGTTACTGTCAACAAATTGAGCAAGGTTTATGGGCAATTGTTGATGTTTCGTACGACTTTCCTCAAGACAATCAATTTGCTCCTCAATTTCGCTGTCATCGTCTTCCTTCTGGCTGCTTCATTCAAGACATGCCTAATGGCTATTCCAAGGTAACTTGGATCGAACATTTGGAGATTGAAGACAAAAATCCAGTTCATAGGCTTTATAGAAATGTTATCTACACTGGTGCTGCCTTTGGAGCTGAAAGATTTCTCACTACACTTCAGAGAATGTGTGAAAGACTTGCTTGTCTCATGGTTTCGGCCAACTCTACTCGCGATCTCGGTGGAGTGATTCCTTCACCTGAGGGAAAGAGGAGTATGATGAAGTTAGCACAAAGAATGGTAACTAATTTCTGTGCAAGCATAAGTGCATCAGCAAGTCATAGATGGACCACACTTTCAGCTTTGAATGAAATTGGAGTCAGAGTTACTGTAAGAAAGAGTACAGATCCTGGTCAACCTAATGGTGTTGTGCTAAGTGCAGCTACTACCATTTGGCTACCTTTACCTCCACAAACTGTTTTCAATTTCTTCAAAGATGAAAGGAAAAGATCTCAGTGGGATGTTCTTTCCAATGGTAATGCTGTTCAAGAAGTTGCTCATATAGCAAATGGTGCACATCCTGGTAACTGCATTTCTGTGCTTAGGGCATTCAACACAAGTCAAAACAACATGTTGATCCTACAAGAAAGCTGTGTGGATTCATCAGGTTCACTTGTAGTCTATTGTCCAGTTGATTTACCAGGTATCAACATAGCAATGAGCGGCGAAGATCCTTCGTACATTCCATTACTCCCTTCTGGTTTCACAATTACATCGGACGGAAACCAAAGCGATACTACCAACAACAACAATATTCAAAGTGGTGGTGGTGGTGGTGGATCATTAATAACAGTTGCATTTCAAATTATGGTAAGCAGTTTACCATCTGCAAAACTTAACATGGAGTCTGTTGCAACTGTTAATGGACTTATTGGTGAGACTGTCCAACACATAAAAGCTGCTTTGAATTGTCCTAGTTCTTGA 2148 0.406 MEYHSGGSGSPGDHHHHHHHHDGSSDSQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCQLRAENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRLENAQLKEELDKVSSIAAKYIGRPISQLPPVTPIHISSLDLSMGSFGGHGMGGGPSLDLDLLPGSSSTMQNLPYQPPCLSEMEKSLMSEIATNAMDELVRLLQTDEPLWMKSNTDGRDLLNLDTYDRMFPKANNRLKNPNIRTEASRDSGVVIMNGLTLVEMFMDHDKWMELFPTIVAMAKTIEVIASGMIGGHSGSLKLMYEELQVLSPLVPIREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRCHRLPSGCFIQDMPNGYSKVTWIEHLEIEDKNPVHRLYRNVIYTGAAFGAERFLTTLQRMCERLACLMVSANSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASASHRWTTLSALNEIGVRVTVRKSTDPGQPNGVVLSAATTIWLPLPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGAHPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPGINIAMSGEDPSYIPLLPSGFTITSDGNQSDTTNNNNIQSGGGGGGSLITVAFQIMVSSLPSAKLNMESVATVNGLIGETVQHIKAALNCPSS 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01710 715 SUPERFAMILY Bet v1-like 221 455 - -
Trre12g01710 715 FunFam Homeobox-leucine zipper protein HDG1 17 104 - -
Trre12g01710 715 Pfam Homeodomain 31 86 IPR001356 GO:0003677
Trre12g01710 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 28 711 IPR042160 -
Trre12g01710 715 Gene3D - 15 104 - -
Trre12g01710 715 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Trre12g01710 715 FunFam Homeobox-leucine zipper protein GLABRA 2 229 453 - -
Trre12g01710 715 Coils Coil 136 156 - -
Trre12g01710 715 CDD START_ArGLABRA2_like 224 453 - -
Trre12g01710 715 SMART HOX_1 29 92 IPR001356 GO:0003677
Trre12g01710 715 SMART START_1 229 454 IPR002913 GO:0008289
Trre12g01710 715 MobiDBLite consensus disorder prediction 13 38 - -
Trre12g01710 715 MobiDBLite consensus disorder prediction 1 38 - -
Trre12g01710 715 SUPERFAMILY Homeodomain-like 9 88 IPR009057 -
Trre12g01710 715 CDD homeodomain 30 89 IPR001356 GO:0003677
Trre12g01710 715 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Trre12g01710 715 Gene3D - 228 455 IPR023393 -
Trre12g01710 715 ProSiteProfiles START domain profile. 220 457 IPR002913 GO:0008289
Trre12g01710 715 Pfam START domain 230 454 IPR002913 GO:0008289
Trre12g01710 715 SUPERFAMILY Bet v1-like 475 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01710 Trre-Chr12 16860227 16864600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01710 26 715 Homeobox Transcription Factor Family AT1G73360 66.241 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre12g01710 START 1.4e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01710 K09338 - gmx:100809075 1186.4