Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01694 ATGCTGCTGCTTGGTATGAAGCAGGATCAAGTTGACGGCACAAAGTCCACTTTCAATGGCGCATTTAGTAAGTGCAATTCTAAAGGTGGACCACAATCTGAGAATGTGGCGAAGTCGCAGGATATACCTTCTGTTGCAAACAACCTTACTCCCAAGGTGAGGAAACCGTATACCATCACTAAACAAAGGGAGAAATGGACTGATGAAGAGCATCAGAAGTTTCTCGAGGCTTTGAAATTGTATGGTCGAGGCTGGCGTCAAATTGAAGAACATATAGGATCCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGAGGGAACCTGATGGCAGTGCTGAAAGCTCTATTCAGCCAATTGACATACCTCCTCCCCGGCCGAAAAGGAAACCCCTTCATCCATACCCTCGGAAATCCATCGACTCTTTCAAAGGACAGTCGGCTCCGAATGATTCAGAGACATCTCCATCCATTAACCTGTCAGTTGCAGAAAACGACACCCAATCTCCAACCTCCGTACTATCTGCACATGGTTCTGAAGCATTCGGCTCAGCAGCATTTTCTGAGCAGACTAATAGATGTCTTTCTCCAAATTCTTGCACCACCGAGATTCACCCGGTCAGCTTGTCACCTGTTGAGAAAGAAAATGATAGCCAAACATCCAAACCGTCCGAGGAGGAAGAGAAAGGGTCTCCTCCAGCTTTGGTTCCTTTATCAACCGACTCAAAACCACTTATGTGCTTGAAGTCCGAGATGATTTCTTCGGAGGAAACTCAATGTTTCAAAGAAGATGCTGCAAATACGCCACACGTCACTTGTATTAAGCTGTTCGGCAGAACAGTCTCAATGGTAGGTACTGAGAAGTCAATAAATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAAACTTTAAGCCAATAGCTATCAAATCTGATGAAATCGTCGAGAACGAAAAGATTGGCCAAGAAGAGGTATCAGAGCAGCTAGATACACAATTATCACTAAGCACATGTAGTGGTAATTTGCATATAACACCTGATGGAGTTCAAGTAAGAAGCACTGAACAACCGAAGGAGAATCTATACATCGGCGATTGCGCAGCAGCATCTTTACCATTGTGGAGTTTGTACCAAGGCCTTCCATCATTCAACCTCAAACCATGCAATCATGAGATTATAAATCCTGTACCTCTTAGACCCTCTTTGAAGATAAGAACAAGAGAGGAAGAAAGTTCTTGCACTGGTTCAAATACTGAATCAGTATGTGATATGGAAAATCAAAGCAAGAACAACTCATCATCGGATACCGATGATTCTCAAAGTCAAAAACAACATCATCAAGAAGGTGTAGTAATTAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGAAAATTCTTTAATTGTTGGATTGGAAGAAAGAGAAGGACAAAGAGCTCGTGTGTGTTCATAG 1500 0.4213 MLLLGMKQDQVDGTKSTFNGAFSKCNSKGGPQSENVAKSQDIPSVANNLTPKVRKPYTITKQREKWTDEEHQKFLEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESSIQPIDIPPPRPKRKPLHPYPRKSIDSFKGQSAPNDSETSPSINLSVAENDTQSPTSVLSAHGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPVEKENDSQTSKPSEEEEKGSPPALVPLSTDSKPLMCLKSEMISSEETQCFKEDAANTPHVTCIKLFGRTVSMVGTEKSINDDDDDDDDDDDDDENFKPIAIKSDEIVENEKIGQEEVSEQLDTQLSLSTCSGNLHITPDGVQVRSTEQPKENLYIGDCAAASLPLWSLYQGLPSFNLKPCNHEIINPVPLRPSLKIRTREEESSCTGSNTESVCDMENQSKNNSSSDTDDSQSQKQHHQEGVVIKKSGRGFVPYKRCLAERDENSLIVGLEEREGQRARVCS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01694 499 SMART sant 62 110 IPR001005 -
Trre12g01694 499 FunFam protein REVEILLE 6 isoform X1 65 113 - -
Trre12g01694 499 CDD SANT 65 108 IPR001005 -
Trre12g01694 499 MobiDBLite consensus disorder prediction 296 311 - -
Trre12g01694 499 MobiDBLite consensus disorder prediction 22 49 - -
Trre12g01694 499 MobiDBLite consensus disorder prediction 112 181 - -
Trre12g01694 499 ProSiteProfiles SANT domain profile. 61 112 IPR017884 -
Trre12g01694 499 MobiDBLite consensus disorder prediction 197 248 - -
Trre12g01694 499 SUPERFAMILY Homeodomain-like 57 111 IPR009057 -
Trre12g01694 499 MobiDBLite consensus disorder prediction 197 223 - -
Trre12g01694 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Trre12g01694 499 MobiDBLite consensus disorder prediction 422 447 - -
Trre12g01694 499 MobiDBLite consensus disorder prediction 293 312 - -
Trre12g01694 499 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Trre12g01694 499 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 110 IPR006447 GO:0003677
Trre12g01694 499 PANTHER SWI/SNF COMPLEX-RELATED 38 427 - -
Trre12g01694 499 Gene3D - 65 112 - -
Trre12g01694 499 MobiDBLite consensus disorder prediction 149 181 - -
Trre12g01694 499 MobiDBLite consensus disorder prediction 415 459 - -
Trre12g01694 499 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01694 Trre-Chr12 16624840 16627610 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre12g01694 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01694 - - gmx:778089 602.438