Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01693 ATGGTTATGGCTAACATTGTTGTTGGAGTAACTTCTCTTCCTCTCCCTTCATTAACCTTAACATACTCAAACACTTTCACTCTTAACTCCAAAATTAAGACCCAAAATCATAAACTTTATCTAAATTTCTCCCAAACAAATCACAAAACAACCTCATTTTCATCTTCCTTATCATCATCATCATCAATTAGAAACAAAAGTAGTAGTTGTTCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAACCCTCGTCTTCATCTTCCAGTTCACCTTCAACTAAGCTATATATCAGTGGGCTATCATTTCGTACAACCGAAGAGAGCTTGCGAAATGCATTTAAAAATTTCGGTCAACTTGTTGAAGTTAATCTTGTGATGGATAAAGTTGCAAATAGACCAAGAGGGTTTGCATTCCTTCGTTATGAAACCGAAGAGGAATCGAAGAAAGCTATTGAAGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCTAAACCGAGATCAGAGCTACGGCAGAAATTGAAGCAAAACACTTTGTAG 552 0.375 MVMANIVVGVTSLPLPSLTLTYSNTFTLNSKIKTQNHKLYLNFSQTNHKTTSFSSSLSSSSSIRNKSSSCSVLACLPPASEPSSSSSSSPSTKLYISGLSFRTTEESLRNAFKNFGQLVEVNLVMDKVANRPRGFAFLRYETEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQKLKQNTL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01693 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 170 IPR000504 GO:0003723
Trre12g01693 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 163 IPR000504 GO:0003723
Trre12g01693 183 PANTHER NUCLEOLAR PROTEIN 8 80 176 - -
Trre12g01693 183 Gene3D - 30 181 IPR012677 -
Trre12g01693 183 SMART rrm1_1 93 166 IPR000504 GO:0003723
Trre12g01693 183 SMART rrm2_1 93 166 IPR003954 GO:0003676
Trre12g01693 183 SUPERFAMILY RNA-binding domain, RBD 75 176 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01693 Trre-Chr12 16620747 16623277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01693 81 181 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 9.75e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01693 - K13195 gmx:100305561 191.045