Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01692 ATGTTTCTCAGTTTCGTAATCAGTGCAGAGGAAATGGTTATGGCTAACATTGTTGTTGGAGTAACTTCTCTTCCTCTCCCTTCATTAACCTTAACATACTCAAACACTTTCACTCTTAACTCCAAAATTAAGACCCAAAATCATAAACTTTATCTAAATTTCTCCCAAACAAATCACAAAACAACCTCATTTTCATCTTCCTTATCATCATCATCATCAATTAGAAACAAAAGTAGTAGTTGTTCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAACCCTCGTCTTCATCTTCCAGTTCACCTTCAACTAAGCTATATATCAGTGGGCTATCATTTCGTACAACCGAAGAGAGCTTGCGAAATGCATTTAAAAATTTCGGTCAACTTGTTGAAGTTAATCTTGTGATGGATAAAGTTGCAAATAGACCAAGAGGGTTTGCATTCCTTCGTTATGAAACCGAAGAGGAATCGAAGAAAGCTATTGAAGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCTAAACCGAGATCAGAGCTACGGCAGAAATTGAAGCAAAACACTTTGTAG 585 0.3761 MFLSFVISAEEMVMANIVVGVTSLPLPSLTLTYSNTFTLNSKIKTQNHKLYLNFSQTNHKTTSFSSSLSSSSSIRNKSSSCSVLACLPPASEPSSSSSSSPSTKLYISGLSFRTTEESLRNAFKNFGQLVEVNLVMDKVANRPRGFAFLRYETEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQKLKQNTL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01692 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Trre12g01692 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 174 IPR000504 GO:0003723
Trre12g01692 194 Gene3D - 41 192 IPR012677 -
Trre12g01692 194 SUPERFAMILY RNA-binding domain, RBD 86 187 IPR035979 GO:0003676
Trre12g01692 194 PANTHER NUCLEOLAR PROTEIN 8 91 187 - -
Trre12g01692 194 SMART rrm1_1 104 177 IPR000504 GO:0003723
Trre12g01692 194 SMART rrm2_1 104 177 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01692 Trre-Chr12 16620714 16623277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01692 92 192 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.30e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01692 - K13195 gmx:100305561 191.045