Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01689 ATGTTTGGTTCTCAACAACGTAGGTACATTATGAGTCATATGTTTGAGAATGAGTTGCCAAGGGGACCTTATCAACTAGAATTTGGAGGTCAGACAAGTGAACAAGAACAACAACCCAAAAAAAGGAGTTATCGCTGCATCACACAGGAGCAAATAGAAGAACTGGATGCTTTCTTCAAGCTGAATGATCACCCAAATGAGAGTGAAAGAAAAGACTTGGGTCATCATCTTGGCTTAGATCCTTCACAAATCAAGTATTGGTTTCAGAACAAGCGCACCAAATTGAAGACCCTAAGTCAAAGAGAAGAGAATAAAGCTTTGAAGGAGGAAAATGAAAAACTTCGAGCAGAGAATGCTATGCTTCGAGCTCAGATGAATAGGTCCAAGGAGACCAACATGTGTGGACCCCCAACTACCATGATCATGTCCAATGTACATCAACAATTGGGGGCTGAGAATACACTCATAAGACCAAGGTACCCATATAATTTATTTTATAATGTCATATAA 510 0.3961 MFGSQQRRYIMSHMFENELPRGPYQLEFGGQTSEQEQQPKKRSYRCITQEQIEELDAFFKLNDHPNESERKDLGHHLGLDPSQIKYWFQNKRTKLKTLSQREENKALKEENEKLRAENAMLRAQMNRSKETNMCGPPTTMIMSNVHQQLGAENTLIRPRYPYNLFYNVI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01689 169 Pfam Homeodomain 41 96 IPR001356 GO:0003677
Trre12g01689 169 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 38 157 IPR042160 -
Trre12g01689 169 MobiDBLite consensus disorder prediction 21 42 - -
Trre12g01689 169 CDD homeodomain 41 96 IPR001356 GO:0003677
Trre12g01689 169 SMART HOX_1 40 102 IPR001356 GO:0003677
Trre12g01689 169 Gene3D - 27 116 - -
Trre12g01689 169 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Trre12g01689 169 SUPERFAMILY Homeodomain-like 27 97 IPR009057 -
Trre12g01689 169 Coils Coil 97 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01689 Trre-Chr12 16608035 16609113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01689 29 157 Homeobox Transcription Factor Family AT4G04890 43.077 6.81e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre12g01689 Homeodomain 1.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01689 K09338 - nnu:104604866 119.012