Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01687 ATGTCACCAGTTGGATTACCACCAGGTTTCAGGTTTCATCCAACTGATGAAGAGCTTGTCAATTATTATCTAAAAAGAAAAATCAATGGTCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTTTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAGTGGTACTTTTTCGGACCGCGGGACAGGAAATACCCAAATGGATTTAGAACAAATAGAGCAACTAGAGCAGGATACTGGAAATCTACTGGAAAAGACAGAAGAGTTTCAAGCCAAAGTAGACCTATTGGTATGAAGAAGACTTTGGTTTACTATAGAGGTAGAGCTCCTCAAGGAATTAGAACTGATTGGGTCATGCATGAGTATCGTCTTGATGATAAAGAGTGTGAGGACAACACTGGATTACAGGATACTTATGCATTATGTCGTGTGTTCAAGAAAAACGGAATCTGTTCTGATATGGAAGAGCAACAAGCACAATGTAGTATGTCGTCACTAATCGAATGCTCTCAAACCATAATCAATGAGTGTGAAACGATGTCTCCGGACATACTAGGAGCATCATCTTCATGCTTAGAAGAGGAAGACAAAGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCAACAATGGTTGGTTGTGAAGAAGTTTCACATGTTACATTTACAAACTAA 723 0.3817 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSSQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNTGLQDTYALCRVFKKNGICSDMEEQQAQCSMSSLIECSQTIINECETMSPDILGASSSCLEEEDKDDSWMQFITEDAWYSSNAATMVGCEEVSHVTFTN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01687 240 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Trre12g01687 240 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Trre12g01687 240 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Trre12g01687 240 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Trre12g01687 240 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 194 - -
Trre12g01687 240 FunFam Nac domain-containing protein 86 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01687 Trre-Chr12 16591021 16596230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01687 1 227 NAC Transcription Factor Family AT3G17730 77.917 3.69e-134 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g01687 NAM 5.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01687 - - tpra:123910158 502.286