Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01686 ATGTTCAAGAGCACAAACAACACTTTTTCTGCAAATATGGCAGATCCTTCTTCTTCCATCTATGAGTTCTTCAAGCAACAACAACCATCTTCATCATCAAGAGCTGCTAGAAGATCCTCTTCATCTTCAACAACAAGAACTTTTCAATGCCATTTTTGTAACAGAAAGTTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAATGCTCACAAACTTGAAAGAGCTGCTGCTAGAACAAGAACCATCAACCTTAATAACAACAACACCATCAATGGTAATGTCTCTTTCTCATCACCACAACAACAACAACCACCACCTTCATTTTCACTCATTGAATGA 339 0.3835 MFKSTNNTFSANMADPSSSIYEFFKQQQPSSSSRAARRSSSSSTTRTFQCHFCNRKFYTSQALGGHQNAHKLERAAARTRTINLNNNNTINGNVSFSSPQQQQPPPSFSLIE 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01686 112 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Trre12g01686 112 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 23 88 IPR044246 GO:0009788
Trre12g01686 112 Gene3D Classic Zinc Finger 24 105 - -
Trre12g01686 112 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
Trre12g01686 112 MobiDBLite consensus disorder prediction 86 112 - -
Trre12g01686 112 MobiDBLite consensus disorder prediction 20 46 - -
Trre12g01686 112 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01686 Trre-Chr12 16523952 16524290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01686 13 104 C2H2 Transcription Factor Family AT5G14010 40.351 2.25e-15 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre12g01686 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01686 - - tpra:123891679 97.8265