Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01685 ATGGTTAGAAAGAAGAGAACTGATGGACCTGGTGGTGCTGAAACCTCTGATGGTCAACAGAGGAGTGCACCGCCTCAACAACAAGCTGCTGTAACTGGAGGTGCAGGACCTCAAGGAGGGGGAGGACCCCAAGGAGGTCGAGGCTGGGCTCCCCAAGGTGGTCGTGGGGAATATGGAGGTGGACGTGGGGATTATGGAGGTGGTCGTGGTGGCTATGGTGGTGGTCGTGGTGGCCGTGGGATTCCCCAACAGCAGTATGGTGGGCCTCCTGAGTATCAAGGAAGGGGCAGAGGCAGGGGAGGGCCTTCTCAGCAAGGAGGTCGCGGATATGGTGGTGGCCGTGGCGGATACAGTGGTGGTGTGGGTGCTGGCGGTGGCCATGACGTAGTTCCTTCATATGGCGGCCCACCGAGGCAACCCGTCCCCGAGCTGCACCAAGCAACCTCAGTTCCATCTGCACCATATCAAGTTGTGGTGTCTCCTCCAACTGCACCCCAATCCGAGGCAAGTTCATCTTCTCAGCTGCCTGAAGTGTCTGAAGTTGGAGAGGAACTGGGACAGATGACAATTCATTCTGAAGAGACTCCTGCTCCACCTCCTCCTGCAAGTAAATCATCATTGAGGTTTCCCCTTCGACCTGGAAAAGGGAGCACCGGTAGAAAATGTATTGTTAAGGCAAACCATTTCTTTGCTGAGTTGCCGAAGAAAGATCTACATCAGTATGATGTGACAATTACCCCTGAAGTGCCTTCCAGGGGTGTGAACCGGGCTGTTATGGAGCAACTTGTGAGGCTGTATCGTGATTCTCACTTAGGAAAGAGACTTCCTGCTTATGATGGGCGTAAGAGTCTATATACTGCAGGGCCACTTCCTTTTATCTCTAAGGACTTCAGAATCACCCTTGTGGATGAGGATGATGGATCAGGAGGGCAGAGGAGGGACAGGGAGTTCAAAGTTGTTATAAAATTGGCTGCACGTGCAGACCTTCACCACCTGGGGCTCTTTTTAGAGGGAAGGCAAACTGATGCACCCCAGGAAGCTCTGCAAGTTCTTGACATTGTTCTCCGCGAGCTTCCTACTTCAAGGTATTGTCCAGTGGGAAGATCATTTTATTCACCTGATTTGGGTAGAAGGCAACCTCTTGGTGAGGGATTGGAAAGTTGGCGCGGTTTCTATCAAAGCATCCGACCCACCCAAATGGGTTTGTCACTGAACATTGATATGTCATCAACAGCTTTTATTGAGCCTTTGCCTGTGATTGATTTTGTTACTCAGTTGCTGAATAGGGATGTCTCGGCCCGACCTCTGTCTGATGCTGATAGAGTAAAGATCAAAAAAGCACTCCGTGGTATCAAAGTTGAAGTTACTCATCGTGGTAACATGAGGAGGAAGTATCGTATTTCTGGTCTGACTTCACAAGCTACCAGAGAGTTGACATTCCCTGTGGACGAGAGGGGAACTATGAAATCTGTTGTTGAGTATTTCTATGAGACATACGGATTTTCCATTCAACATACTCAATGGCCTTGTTTGCAAGTGGGCAACACACAGAGACCAAACTACCTTCCAATGGAGGTATGCAAAATTGTGGAAGGTCAGAGGTACTCAAAGCGTCTCAACGAGAGGCAGATTACTGCTCTACTGAAAGTCACCTGCCAGCGACCCCTTGATAGGGAACGCGATATCATGCAGACGGTACACCACAATGCATACCATGAAGATCCTTATGCTAAAGAGTTTGGAATCAAAATCAGTGAGAAACTTGCTCAAGTTGAAGCTCGCATTCTTCCTCCACCTTGGCTCAAATATCATGATACGGGTAGAGAGAAGGATTGTCTACCCCAAGTTGGCCAGTGGAACATGATGAATAAGAAAATGGTCAATGGGGGAACAGTCAACAACTGGTTCTGTGTTAATTTTTCAAGGAATGTGCAAGACAGTGTTGCACGCGGCTTTTGCAGTGAACTTGCCCAGATGTGTTATATATCTGGCATGGCATTTAATCCTGATCCAGTAGTTCCTCCGCTTAGTGCCCGTCCTGATCAAGTAGAAAAGGTTCTGAAAACACGTTATCATGATGCGAAGAACAAGCTGCAGGGGAAGGAGCTTGACTTTCTCATTGTCATTTTACCAGATAATAATGGCTCTCTCTATGGTGATCTGAAACGTATATGTGAGACTGACCTGGGGGTTGTTTCCCAGTGTTGTTTAACAAAACATGTATTTAAGATGAGCAAGCAGTACCTTGCAAATGTGGCATTGAAAATCAATGTTAAGGTTGGAGGTAGGAACACTGTGCTTGTCGATGCTCTTTCACGACGCATTCCACTAGTCAGTGACAGGCCTACAATTATTTTTGGAGCTGATGTAACTCATCCACACCCTGGAGAGGATTCTAGTCCCTCAATAGCAGCTGTTGTTGCTTCTCAAGATTGGCCGGAAATTACCAAGTATGCTGGTTTGGTTTGTGCCCAAGCACATCGGCAAGAGCTCATCCAGGATCTTTTTAAGCAATGGCAAGATCCAGCTAGAGGAACATTGACTGGTGGAATGATCAAGGAGCTTCTTATATCATTCCGCAGAGCTACTGGACAAAAGCCCCAGCGTATCATATTTTACAGAGATGGAGTGAGCGAGGGGCAATTTTACCAAGTCCTGTTGTTTGAGCTTGATGCAATCCGGAAGGCTTGTGCTTCTCTTGAACCCAACTATCAGCCTCCTGTGACTTTTGTGGTGGTCCAGAAACGTCACCATACTAGGCTCTTTGCCAGTAACCATCATGACAAAAGTTCTGTTGATCGTAGTGGCAACATTTTACCTGGCACAGTTGTGGATTCTAAGATTTGTCATCCTACCGAATTCGACTTCTATCTTTGCAGTCATGCTGGAATTCAGGGTACTAGCCGTCCAGCTCATTACCATGTTTTATGGGATGAGAACAATTTCACTGCTGATGCTTTACAAAGTCTAACTAACAACTTGTGCTACACTTATGCCCGATGCACCCGATCTGTTTCAATTGTGCCCCCTGCATATTATGCTCATTTGGCTGCATTCCGCGCAAGGTTCTATATGGAACCGGAGACTTCAGATAGCGGTTCTATGACCAGTGGCGCGGTGTCTCGTGGTGGAATGGGAGCAGCAGCAGGACGTAGCACTCGTGCACCTGGAGCTAATGCAGCCGTGCGACCCCTGCCTGCATTGAAGGAGAACGTCAAGAGGGTCATGTTTTATTGCTGA 3240 0.4787 MVRKKRTDGPGGAETSDGQQRSAPPQQQAAVTGGAGPQGGGGPQGGRGWAPQGGRGEYGGGRGDYGGGRGGYGGGRGGRGIPQQQYGGPPEYQGRGRGRGGPSQQGGRGYGGGRGGYSGGVGAGGGHDVVPSYGGPPRQPVPELHQATSVPSAPYQVVVSPPTAPQSEASSSSQLPEVSEVGEELGQMTIHSEETPAPPPPASKSSLRFPLRPGKGSTGRKCIVKANHFFAELPKKDLHQYDVTITPEVPSRGVNRAVMEQLVRLYRDSHLGKRLPAYDGRKSLYTAGPLPFISKDFRITLVDEDDGSGGQRRDREFKVVIKLAARADLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFSIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPLDRERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCVNFSRNVQDSVARGFCSELAQMCYISGMAFNPDPVVPPLSARPDQVEKVLKTRYHDAKNKLQGKELDFLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPARGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVSRGGMGAAAGRSTRAPGANAAVRPLPALKENVKRVMFYC 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01685 1079 Pfam Piwi domain 706 1025 IPR003165 GO:0003676
Trre12g01685 1079 MobiDBLite consensus disorder prediction 145 178 - -
Trre12g01685 1079 ProSiteProfiles PAZ domain profile. 417 531 IPR003100 GO:0005515
Trre12g01685 1079 Gene3D - 595 768 - -
Trre12g01685 1079 SMART Piwi_a_2 705 1026 IPR003165 GO:0003676
Trre12g01685 1079 FunFam protein argonaute 10-like 774 1079 - -
Trre12g01685 1079 MobiDBLite consensus disorder prediction 13 33 - -
Trre12g01685 1079 FunFam Argonaute 10 595 768 - -
Trre12g01685 1079 Pfam Argonaute linker 2 domain 557 603 IPR032472 -
Trre12g01685 1079 SMART DUF1785_2 364 416 IPR014811 -
Trre12g01685 1079 Pfam N-terminal domain of argonaute 220 355 IPR032474 -
Trre12g01685 1079 Pfam Argonaute linker 1 domain 365 415 IPR014811 -
Trre12g01685 1079 Pfam Mid domain of argonaute 614 689 IPR032473 -
Trre12g01685 1079 ProSiteProfiles Piwi domain profile. 705 1026 IPR003165 GO:0003676
Trre12g01685 1079 Gene3D paz domain 410 535 - -
Trre12g01685 1079 CDD Piwi_ago-like 575 1025 IPR045246 -
Trre12g01685 1079 Pfam Glycine-rich region of argonaut 87 196 IPR024357 -
Trre12g01685 1079 Pfam PAZ domain 421 546 IPR003100 GO:0005515
Trre12g01685 1079 Gene3D - 774 1079 IPR036397 GO:0003676
Trre12g01685 1079 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 198 1027 - -
Trre12g01685 1079 SUPERFAMILY Ribonuclease H-like 691 1026 IPR012337 -
Trre12g01685 1079 MobiDBLite consensus disorder prediction 1 184 - -
Trre12g01685 1079 CDD PAZ_argonaute_like 416 530 - -
Trre12g01685 1079 SMART PAZ_2_a_3 421 553 IPR003100 GO:0005515
Trre12g01685 1079 MobiDBLite consensus disorder prediction 191 210 - -
Trre12g01685 1079 FunFam Protein argonaute-2 410 536 - -
Trre12g01685 1079 SUPERFAMILY PAZ domain 223 568 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01685 Trre-Chr12 16508681 16515016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01685 91 1079 Eukaryotic Initiation Factors Gene Family AT1G48410 80.742 0.0 1637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01685 K11593 - gmx:100780375 1766.13