Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01672 ATGAACGGAAAAGCTTCCGTTTCTAAGGAGCTTCAAGCTAAACACACCAAGATCTTAGAGGGACTTCTTAAGCTAGCTGACAACAGGGAATGTGCAGACTGTTGGACCAAGGCACCACGATGGGCTAGTGTGAACTTAGGAATTTTTATTTGCATGCAATGTTCAGGGATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGAGGTCCACAACTTTGGATACATGGTTGCCAGAACAAGTTTCTTTCATGCAATATATGGGTAATGTGAAGTCAAATAAGCACTGGGAAGCTAAACTGCCACCAAATTTTGACAGAAATGAATATGGAATCGAGAAGTTTATCCGTGCCAAATATGTGGAGAAAAGATGGGCTTTACAAGGTGAACTACAATCTTCAAAGTCAGCTGAAATACCGGTTGACTTCAAAGTGTCACAAACTACTGGGGCCAAGAATGGTATTCAAAAAAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAATCACATGGCACAAATTCGGCCTCCAATACCAAAATTTCAAGAGGGTCCCTTAGATTTAAAAATGAAGATTTCACCACCAATAAAGAGGCCATCAACATCACTTGATTTTGATAAATCCAATGGAAATAGCAACGGTACCGTCGATCTTTTTAACTTGCTTTCCTTCGACGACAATAAACAGAATATATCAACTACACCTTCTAGCTGGACAACATTTGATTGTAAGATTACATTACTTGTAATATCTCATCTTCTGAATATTTGTTCTATTTTCTTTGATTCACATGGTTCATGTTATGTGTACTTGGAAATTATTAAATCAGCAATTATGTTTTCAGGAGAAGGCGTGCGAATTGTTTATAGATTTGTTGAGCTAGCTTTTTGGATAGATATCACAAGATTATGGTTAAATACGTTGTTGCACGAACATCAAGCTGCATTGGTCTGGTGTGTACTTCTCATTGTAATTTAG 978 0.3793 MNGKASVSKELQAKHTKILEGLLKLADNRECADCWTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQYMGNVKSNKHWEAKLPPNFDRNEYGIEKFIRAKYVEKRWALQGELQSSKSAEIPVDFKVSQTTGAKNGIQKNRRLSLEESILVNHMAQIRPPIPKFQEGPLDLKMKISPPIKRPSTSLDFDKSNGNSNGTVDLFNLLSFDDNKQNISTTPSSWTTFDCKITLLVISHLLNICSIFFDSHGSCYVYLEIIKSAIMFSGEGVRIVYRFVELAFWIDITRLWLNTLLHEHQAALVWCVLLIVI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01672 325 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 133 IPR001164 GO:0005096
Trre12g01672 325 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
Trre12g01672 325 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Trre12g01672 325 SMART arf_gap_3 5 130 IPR001164 GO:0005096
Trre12g01672 325 CDD ArfGap 19 119 - -
Trre12g01672 325 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Trre12g01672 325 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Trre12g01672 325 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Trre12g01672 325 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 242 IPR044520 GO:0005096
Trre12g01672 325 FunFam stromal membrane-associated protein 1 isoform X1 1 129 - -
Trre12g01672 325 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01672 Trre-Chr12 16337014 16341354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01672 19 119 C2H2 Transcription Factor Family AT4G05330 50.467 9.38e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01672 K12486 - gmx:100802691 366.696