Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01668 ATGTCTTCTACCGGCGCCGACGAAAATCCTCATACCGGTGTTAACTCCGACGAACTTCGCCGTTACTTTTGCCACCAGTGCGAACGCACAGCTTTCATTTCCAATTCATCCACCGATCTAATCTGTCCCAATTGCAACGGATTCTCCTTTCCCCTCCTTTTCTCTGGTGCCGGCGCCGCCACCGCTTCTCAACCGTTCAATGATCTATCCGCTTTATTAACGTCTCCGGCAGCGCCTTCACCTTTCGGCGAAGCGTTTAACCCTGTCGCGTTTATTCAAAACTACCTCCGCAATATGAATGCCGGAGGTGGCAACGTTCAGTTCTTCATCAACGATGCTGACGATCCGGCGAGACAGTTCCGGTTTCCCGGAAACGCTAATCCAGGAGATTATTTCTTTGGACCTGGACTTGAGGATCTGATCCAGCAATTAGCAGAGAACGATCCGAATCGGCGTGGGACACCGCCGGCGTCGAAGTCTGCTGTGGAAAAGCTTCCGGTTATTGAAGTTACGGAGGAGCTGCTGGAATCGGATTCATCGCAGTGCGCGGTGTGTAAAGACACATTTGCCCTTGGCGAAAAGGCGAAGCAGATGCCGTGTAAGCATATATATCATACTGATTGTATCTTGCCGTGGTTGGAATTGCATAATTCTTGTCCTGTTTGTCGTCATGAGTTGCCTACAGATGATCCTGATTATGAGCAGAGGGCTCGTGGTGGTGGTGGTGGTGGCGGAGGCGGTGCTGGTGGTGGTGGAGGAGGGGGAGATGATTCAGTGAGAACAAGGTTTAGGGTGTCTTTGCCATTTATGCCGTTAAGGCCTGTACCTTCTTCTTCTGGAGCTACTGCAGGGACAAGTAATATTGGGAATGGGGAATCAGAATTTTGA 888 0.5068 MSSTGADENPHTGVNSDELRRYFCHQCERTAFISNSSTDLICPNCNGFSFPLLFSGAGAATASQPFNDLSALLTSPAAPSPFGEAFNPVAFIQNYLRNMNAGGGNVQFFINDADDPARQFRFPGNANPGDYFFGPGLEDLIQQLAENDPNRRGTPPASKSAVEKLPVIEVTEELLESDSSQCAVCKDTFALGEKAKQMPCKHIYHTDCILPWLELHNSCPVCRHELPTDDPDYEQRARGGGGGGGGGAGGGGGGGDDSVRTRFRVSLPFMPLRPVPSSSGATAGTSNIGNGESEF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01668 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 227 - -
Trre12g01668 295 SUPERFAMILY RING/U-box 162 229 - -
Trre12g01668 295 SMART ring_2 182 222 IPR001841 -
Trre12g01668 295 CDD RING-H2_RNF126-like 181 223 - -
Trre12g01668 295 FunFam E3 ubiquitin-protein ligase RING1-like 143 229 - -
Trre12g01668 295 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
Trre12g01668 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 229 IPR013083 -
Trre12g01668 295 MobiDBLite consensus disorder prediction 278 295 - -
Trre12g01668 295 Pfam Ring finger domain 181 223 IPR001841 -
Trre12g01668 295 MobiDBLite consensus disorder prediction 230 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01668 Trre-Chr12 16294948 16296005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01668 140 239 C3H Transcription Factor Family AT5G15820 55.000 1.22e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01668 K11982 - gmx:100818686 307.375