Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01635 ATGGATCCTGGAAAACGGAGCAGGTTATGGTATTATGAAGATGTGCTTCAAGTACTATCCGATGGAACAGGAACTGACAAGATTCAAGGTATAATGCTGAGCCTACCTGAAAAGCAAGAGGTTCAGATAAAACCTCAAGACCTAAAGAAGATGAGAAACCTTAGAATGTTGATAATTCGGAATGCTGAGTTTTTCGGAGGGCATGTAAATCTACCAAATAATTTAAGGCCGCTTGATTGGGAGGAATACCCTTCTACATTTTTACCATCTGATTTCCTTCCTGAGAAAATTGTAATGCTAGAGTTGCGGCGCAGTCATATAACATTGGACAAGCCATTCAAGAACTATGTAAATATGACTTCTCTCAATCTTAGTTCATGTGAATCCCTACTAAATATACCTGATGTTTCGGGGATACCGAACTTAGAGCAAATTATTCTAGAGGATTGTACAAACTTAGTTGAGATTCATGAAACACTTGGATCACTTGATAAACTAGTTTATTTAGGTGTTGAAAGGTGCACTGAGCTAAAGAAGTTACCAAGTGTCCTAAACTCGCCATCTTTATCATGCATTGCTCTCAATGGATGTTCTCAACTTGAGAATTTCCCAAACTTACTTGGAAAAATGGAAAATCTGAGAATAATCGAGGCGGAAGAGACGGCTATACAAGAATTGCCTTCTAGTTTGGCCAACTTCAGCAACCTTGAGGTGTTAGTACTAAAGAGTTGCACAAATCTTAAAGATTTTCCTAGAACCATTTCTTTGTTGCCAAATCTTCAGTTACTCGATATTTCTGGCTGTCCAAAACTTCAACTATTTCAAGAGTCCACTCAAAGTTCATCAAATTTAGAGTTACCACCAAAACCATGTCTAGATTTTGAGTCTTCAAGCATCCAATCCTCACAAGGTTTCCCTTTATTGGAAACACTTGATCTTAGTGACTGTAATCTATCAGATGATGATCTACATATTCTTTGTTGCTTTTCCAACCTCACATCATTAGACATATCAAGAAACCATTTTGTAACCCTACCTAAATGCTTCAACAAACTGAGTAGCTTGCAGGAGCTTTACATGGCCAATTGCAAGAATCTTCAAAATATTTCTGGGATTCCTCCTAATTTAGAACATATTGATGCCACTAGTTGCACAATGTTGGATTCACAATCATTGAACCTCTTATTAAGCCAGGGATTCCATAAGGAATTCAAATTTGAAGTTATAGCACCAAGGCCAAGATTACCGATGCCATTCGAGTTCAACTACCATAGCAATGGAGGATCCATGTCATTCTGGATTGGCCAGAAGTTTCCAAGAATTGCACTATGCTTCATTTTTGAACTAGGAAATAAAAGAGTTGGTTTTTTTGCATGTGAAGTCGAAATATCCATTAATAGACAGAAAGCATCCAATAAAGAACAGTACTTCCTTTCAGTTTCTGGTGATCTTGTATGGCTTTATCATCAAGAAAATTTGATCGATTTAAATACATATTTATTGCAAGAACAGAATTATGTGGAAGTTTCTTGTGAGATTGTTGATGCTAGTAAAGGCGCAGATGTGACAGTATCCTTTTGTGGAGTTCATGAGTATAAGGAAGATGAGGAAATGAAGAAACCAAATTTGATATTGATCACAAGTTCAAGTCCTTGTAATAGTGAAAACTTGGATAACACTCAAATTTCTAAGGAATCACATAAAAATCAAAGTCATTATGAAGATAACTTGGGAATTGATTGTTGCAGCTTGCCTGAGAAATCAAAGCTTCATGAAATATCAGATGAACATCTGCAACTTCTTTCGGCTTCAACTAGGGAAGAAATGTTTGAAGGTAATGGTTGTAAGGTTCAGAAGAATGGAAAAACTATAGATATTTTGTCAGTGGATACAATACATCAAAGAAAGGAAATGTATTCATTGGATATGCAGCTATATGGTGATAGAATTTGGGATCCAATGCTATTAGAATGTCAGTTAAACTGCATGAATGAGAAGAATAAAGACAACATTTTGCCGAGTAATCAAGAATTGGAGCCAAAAGAATCTTTAAGTGATGACAACATGGAAACATTTTATTCTACTCTCCATGCTGAGAGATATCCTTCATTAGGAGATACAAGTGATGATTCAAAATTGGTTTATCCTAAAATGAGTGAAGAAACCACGAAAGCCTTGGAAATTCTGAAAGAACTCCTCTCAAAACAAATTTGTCATCTTCTAGAACCAACATCATCCACATCAATGAAAACTACTTTGGAATATCTTTGTACTTTAATTGCAGATGATGATGTCTCAATGAGGTTAAAGTCTGTAATACTACAACTTTTAGCTGAATTTACTCAGTGGAGCTGTGACTACAATGATGCAAACATGAAACTTGACTTCTCAACGACAATGCTATCAAAGCTACAAAAACTTGAAGACGGTGTAGTAGCCAACAAGAACCAGTTCAGTGAATTTGTATCCATAGAAAGTGAGTTAACAAGCCAACTAGTGTATTTAGAAGAAAGAATGAAAGACCTAGAAGAGCAAATTAGTGTCATTAAAGTTAACATTTCAATATCTGAAGCGACTAGGGACACTGCTATTAGAAAGAAAAAAGAAACCTTTGATGCAGGAAGAATGTTGAAAGCTGAAAGAGATGAGTTGAGGAAGCGAAGGCTGCGGTTGAGAGTGGAGCAAGAATCAGCTAAAGCTACCAAAGGATACATTGAGGATGAGTGGTCAAAGATTAGAGAGAAATTTGACAGAATCTTGAAAATATTTGGGGTAGATAATTGTTGA 2787 0.3613 MDPGKRSRLWYYEDVLQVLSDGTGTDKIQGIMLSLPEKQEVQIKPQDLKKMRNLRMLIIRNAEFFGGHVNLPNNLRPLDWEEYPSTFLPSDFLPEKIVMLELRRSHITLDKPFKNYVNMTSLNLSSCESLLNIPDVSGIPNLEQIILEDCTNLVEIHETLGSLDKLVYLGVERCTELKKLPSVLNSPSLSCIALNGCSQLENFPNLLGKMENLRIIEAEETAIQELPSSLANFSNLEVLVLKSCTNLKDFPRTISLLPNLQLLDISGCPKLQLFQESTQSSSNLELPPKPCLDFESSSIQSSQGFPLLETLDLSDCNLSDDDLHILCCFSNLTSLDISRNHFVTLPKCFNKLSSLQELYMANCKNLQNISGIPPNLEHIDATSCTMLDSQSLNLLLSQGFHKEFKFEVIAPRPRLPMPFEFNYHSNGGSMSFWIGQKFPRIALCFIFELGNKRVGFFACEVEISINRQKASNKEQYFLSVSGDLVWLYHQENLIDLNTYLLQEQNYVEVSCEIVDASKGADVTVSFCGVHEYKEDEEMKKPNLILITSSSPCNSENLDNTQISKESHKNQSHYEDNLGIDCCSLPEKSKLHEISDEHLQLLSASTREEMFEGNGCKVQKNGKTIDILSVDTIHQRKEMYSLDMQLYGDRIWDPMLLECQLNCMNEKNKDNILPSNQELEPKESLSDDNMETFYSTLHAERYPSLGDTSDDSKLVYPKMSEETTKALEILKELLSKQICHLLEPTSSTSMKTTLEYLCTLIADDDVSMRLKSVILQLLAEFTQWSCDYNDANMKLDFSTTMLSKLQKLEDGVVANKNQFSEFVSIESELTSQLVYLEERMKDLEEQISVIKVNISISEATRDTAIRKKKETFDAGRMLKAERDELRKRRLRLRVEQESAKATKGYIEDEWSKIREKFDRILKIFGVDNC 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01635 928 Pfam Leucine rich repeat 307 363 IPR001611 GO:0005515
Trre12g01635 928 Coils Coil 825 852 - -
Trre12g01635 928 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 210 384 IPR044974 GO:0006952
Trre12g01635 928 Gene3D Ribonuclease Inhibitor 32 203 IPR032675 -
Trre12g01635 928 Gene3D Ribonuclease Inhibitor 290 402 IPR032675 -
Trre12g01635 928 Gene3D Ribonuclease Inhibitor 204 287 IPR032675 -
Trre12g01635 928 SUPERFAMILY L domain-like 33 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01635 Trre-Chr12 16060052 16063748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01635 3 279 WRKY Transcription Factor Family AT4G12020 35.374 1.06e-34 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01635 - - tpra:123904012 1661.35