Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01624 ATGGACAGCCTTTCTAGTTTAAAGAATAATGTTGAGTGTATGAGTGAGAGCATAGAGAATAAAGAAGAGCAAGAAATTCTAGAGGATGAAGAAGAAAGCTTCTCATATGCTATGCAGCTTTCAACGTCTATTGCATTTCCCATGGCACTGCAATCTGCAATTGAGCTTGGAGTATTTGAAGTGTTGCAAAAGGCTGGTAAAGGTGCTCGACTCTCTGCCGATGAAATTGTTTCCCGTCTTTCCAAAATTAACAATCCCGACGAAGCTTCCAAAATGCTAGATCGCATTCTTGCTCTTCTTGTCTCTCACTCAGTACTTAAGTGTTTTATTGCACCTCATTCCTTTCAGAGACACTACTGCATGACGCTTGTTGCCAATTTTTTTGCTCCAAATGTCGATGGGTTTTCATTAGGACCCTTGATTGCCTTGAATAATGATAAGATCATGTTAGCTAGCTGGTCCCAGCTTAAAGATGCAATTCAGGAAGGAGGTACTCCATTCAACAGGGTTCATGGCAGCCCTTTATTTGATCTTCCCAGCTTAGACTCGAGGCTCAATCAAGCTTTTAATAAAGCAATGAGCAATCATACAACTATAGTCATGAAGAAGATTCTTGAATGCTACAAAGGTTTTAAAGACATAAAATGTCTTGTGGATGTTGGTGGTGGCCTTGGAATAAACCTTAATATGATAACTTCAAAATACACTCACATTCAGGGAATCAATTTCGACTTGCCTCATGTCATACAACATGCTCCTTCCTATCCTGGTTTGTTCTTCACACATTCAGAGACCCACTAG 801 0.3995 MDSLSSLKNNVECMSESIENKEEQEILEDEEESFSYAMQLSTSIAFPMALQSAIELGVFEVLQKAGKGARLSADEIVSRLSKINNPDEASKMLDRILALLVSHSVLKCFIAPHSFQRHYCMTLVANFFAPNVDGFSLGPLIALNNDKIMLASWSQLKDAIQEGGTPFNRVHGSPLFDLPSLDSRLNQAFNKAMSNHTTIVMKKILECYKGFKDIKCLVDVGGGLGINLNMITSKYTHIQGINFDLPHVIQHAPSYPGLFFTHSETH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01624 266 FunFam Caffeic acid 3-O-methyltransferase 15 128 - -
Trre12g01624 266 Pfam Dimerisation domain 48 101 IPR012967 GO:0046983
Trre12g01624 266 Pfam O-methyltransferase domain 153 255 IPR001077 GO:0008171
Trre12g01624 266 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 38 266 IPR016461 GO:0008168
Trre12g01624 266 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 261 IPR029063 -
Trre12g01624 266 Gene3D Vaccinia Virus protein VP39 130 264 IPR029063 -
Trre12g01624 266 PANTHER O-METHYLTRANSFERASE 37 255 IPR016461 GO:0008168
Trre12g01624 266 Gene3D - 14 128 IPR036388 -
Trre12g01624 266 SUPERFAMILY "Winged helix" DNA-binding domain 29 131 IPR036390 -
Trre12g01624 266 Coils Coil 4 24 - -
Trre12g01624 266 Coils Coil 263 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01624 Trre-Chr12 15966548 15968721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01624 30 258 Monolignol Biosynthesis Gene Families AT5G54160 48.707 3.44e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01624 K13066 - gmx:100803633 302.753