Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01623 ATGTGGGCAGGAGTGGAGCATATTGGCGGAGATATGTTTGAAAGCATTCCCAATGGTGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAACGTTGCTTAAAACTTATGAAGAATTGTTATGATGCTATTCCTGATTATGGGAAGGTGATAGTTTTGGAGGCACTTCTACCTATTATGCCAAAGAATGAAGCGGCTTGGAAATCTATCTCCCAAATGGATATTGTCATGATGAATCTTTTTCCACAAGGCAAAGAGCGAACTGAGCAAGAATTCATGGATTTAGCAACTAAAGCTGGATTTCGTGGCATCAAATATGAATGTTGTACCTATAATTTTTGGGTTATGGAGTTCTTCAAGTAA 372 0.3817 MWAGVEHIGGDMFESIPNGDAIFMKWILHDWSDERCLKLMKNCYDAIPDYGKVIVLEALLPIMPKNEAAWKSISQMDIVMMNLFPQGKERTEQEFMDLATKAGFRGIKYECCTYNFWVMEFFK 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01623 123 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 123 IPR016461 GO:0008168
Trre12g01623 123 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 4 121 IPR029063 -
Trre12g01623 123 Gene3D Vaccinia Virus protein VP39 3 112 IPR029063 -
Trre12g01623 123 Pfam O-methyltransferase domain 4 105 IPR001077 GO:0008171
Trre12g01623 123 PANTHER O-METHYLTRANSFERASE 5 108 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01623 Trre-Chr12 15962415 15963278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01623 4 123 Monolignol Biosynthesis Gene Families AT5G54160 51.667 2.08e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01623 K13066 - gmx:100803633 196.052