Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01618 ATGGATCCAAAAGTGTGTGATGAATCAGTGAACGATGCTTCAGATTTCAAGTGTGAGAAGATTCTACACACAGTTGTTAAATCAATTGCATGTCCCACTCCAGATAAGAAGACTGAACAATTACCCATCAAATTCAAACATCCCAAAACCCAGCTTCCAGAAAAGTACAAGATCATTGCTGATTTGTTTAATCATATGAGTTGTGCACTTAGATTGTTGCATCTGCGTAAAAAGTCTCCAACTTTTCAAAATATTTGCAGCAAGGTTGAAATTCTTGCCAAAAGAAACTTCTCCTATTCTCATCTAGCGCAGATGAAGTATATACTTCCTGAAGGTATAGAAATTGAAAAGGTGGTTGTTGTTGAGAAGAAGAGCTTGTGTATGAAACCGGATTTGAAGATCTCCTTGGTATTTGAAGTTCTAGAAGATCATTCTGAACAGTCTGCTTATTTGGCTCTTGGGCGATATTTTAATTCCAAGCTGATTAATTTCTTTAATCAGCATCCCGAGGGTACTGATATTCCAGAAGCCACACTACCAGAGCCCTTTAGCCAAAAACCTTGTAACTTGGTTTTCAAAGATGGACCTGTAAATCTGTCAACTGAACTTTCATCAACTTGCAGTGAAGTTGAACTGTCGCTGAACAACTTACATTTGAGTTCATCTTTTAGAAGACATTTTTCTCAGAAGAATGGTACTGACGAGACTGAACAAGTTCAGTACTTTTCATCATCTACAAACTCGCTGTCAACCCATGAATCTGATTGCCTAGGCAACGAAGAAAGTGAAAGCATATCGCAGAAAAAATGTACACGATTGTCTGATTGTGTCAGTAATCTTAATGCAGAAAGAGGCAAGCAGGAGGAATCACCCTCAATGGGTTTTCAACCAAATGTTATTAATACAACAGTACATAAGATCTCCCCTCCATTTTCTGAAAGCCCTGATTGGAAAATTGTCTCTGGTACTGATAATTTGTTGACACGGACACCTGCACTGTCAGCACCAGAGAGATTGGTGCTTGGTTCTGATGTTAAGATTCAAAAAATGACTGGTCAAAAGTCTACGTCCTGTTTTAAGCCTGCAAAAAGAGTGCTTGACTTTTCACTCACAGAAGCCGGTGATGATTTGGACAATAGAGTAGACATGTCAAAACCTAGCAGAGGATGTTCTGAGGACTTCAAATCATTTGATTCTGTTTCCCTACTTCAGGAGGTACAAGAGAACCTTCATTATTCTCTAAAGAAGATCAACCAAAAGGAAATTGGTTTGGATGCATCGGATGACAATTCTTCATCATTGGTGGAACTGGTTAATGTGATTGACTCTATATTTAGTTCTGTCAAAAGAACTCCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGATGAACTGTTTAGATTTTGTCGAGATTAGCGAAGCTGAAGAACAGATCGAGATTTTGGAAAAGATTGTGCCGGACTGGCTTTGCAAGAAGTTGGTTTCTTCTGGAGACACTATGTACTGCGTCAAGAATGCGGTAGATTTGGAGTCAATTCGATCAAGACTTGTCAACAATGTGACTAAAGGAGATGAGTGA 1581 0.3884 MDPKVCDESVNDASDFKCEKILHTVVKSIACPTPDKKTEQLPIKFKHPKTQLPEKYKIIADLFNHMSCALRLLHLRKKSPTFQNICSKVEILAKRNFSYSHLAQMKYILPEGIEIEKVVVVEKKSLCMKPDLKISLVFEVLEDHSEQSAYLALGRYFNSKLINFFNQHPEGTDIPEATLPEPFSQKPCNLVFKDGPVNLSTELSSTCSEVELSLNNLHLSSSFRRHFSQKNGTDETEQVQYFSSSTNSLSTHESDCLGNEESESISQKKCTRLSDCVSNLNAERGKQEESPSMGFQPNVINTTVHKISPPFSESPDWKIVSGTDNLLTRTPALSAPERLVLGSDVKIQKMTGQKSTSCFKPAKRVLDFSLTEAGDDLDNRVDMSKPSRGCSEDFKSFDSVSLLQEVQENLHYSLKKINQKEIGLDASDDNSSSLVELVNVIDSIFSSVKRTPITKEELLQKIMMNCLDFVEISEAEEQIEILEKIVPDWLCKKLVSSGDTMYCVKNAVDLESIRSRLVNNVTKGDE 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01618 526 CDD Cdt1_m 34 182 IPR014939 -
Trre12g01618 526 Gene3D - 426 524 IPR038090 -
Trre12g01618 526 Pfam DNA replication factor Cdt1 C-terminal domain 425 490 IPR032054 -
Trre12g01618 526 Pfam DNA replication factor CDT1 like 52 117 IPR014939 -
Trre12g01618 526 SMART CDT1_2 52 181 IPR014939 -
Trre12g01618 526 SUPERFAMILY "Winged helix" DNA-binding domain 45 183 IPR036390 -
Trre12g01618 526 PANTHER DNA REPLICATION FACTOR CDT1 39 517 IPR045173 GO:0003677|GO:0030174|GO:0071163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01618 Trre-Chr12 15865451 15869199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01618 423 517 Core DNA Replication Machinery Family AT3G54710 37.273 1.64e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01618 K10727 - gmx:102670055 545.428