Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01593 ATGGCAACTCGTAGGTATGCTTTTGGAAGAGCTGATGAGGCTACACATCCAGATTCTATTAGAGCTACCATAGCTGAATTTGTTTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGTTAAGATTTACCAAGATTCAGCATTCTCAGCTGGTGAACTGTTGGCAGTTGCACTTGCACATGCATTTGCTCTATTTGCTGCTGTGTCTTCTAGCATGCATGTATCTGGTGGCCATGTTAACCCAGCAGTGACATTTGGTGCTCTCATAGGTGGCAGGATCTCTGTGCTTCGTGCTGTTTACTATTGGATTGCTCAACTTCTAGGTGCTATTGTGGCTGCCCTCTTGCTTAGGCTTGTCACTAATAACATGAGACCAGCAGGGTTTCATGTGGCACATGGTATAGGGGCAGGACATGGGCTTCTACTTGAGATTATCATGACATTTGGGCTAATGTACACAGTATATGCAACTGCAATTGATCCCAAAAGGGGTACCAATGCTGCCCTTGCACCTTTGGCAATTGGACTTATTGTTGGTGCAAATATCCTTGTTGGTGGACCATTTGATGGAGCATGCATGAACCCTGCTCTTGCATTTGGGCCTTCTTTGGTGGGTTGGAGATGGCATTACCACTGGATCTTCTGGGTTGGTCCATTCATTGGTGCAGCATTGGCAGCAATCATATATGAATATATTGTGATCCCAACTGAGCCACCTCATGCACACCAGCCTCTAGCTCCTGAAGATTACTAG 768 0.4583 MATRRYAFGRADEATHPDSIRATIAEFVSTFIFVFAGEGSGLALVKIYQDSAFSAGELLAVALAHAFALFAAVSSSMHVSGGHVNPAVTFGALIGGRISVLRAVYYWIAQLLGAIVAALLLRLVTNNMRPAGFHVAHGIGAGHGLLLEIIMTFGLMYTVYATAIDPKRGTNAALAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWIFWVGPFIGAALAAIIYEYIVIPTEPPHAHQPLAPEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01593 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01593 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01593 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01593 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01593 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01593 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01593 255 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01593 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01593 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre12g01593 255 FunFam Probable aquaporin TIP1-1 4 252 - -
Trre12g01593 255 Gene3D Glycerol uptake facilitator protein. 4 245 IPR023271 -
Trre12g01593 255 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
Trre12g01593 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Trre12g01593 255 PANTHER AQUAPORIN-8 6 242 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01593 Trre-Chr12 15699690 15702696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01593 2 255 Major Intrinsic Protein MIP AT1G73190 73.485 4.93e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01593 K09873 - gmx:100817450 438.343