Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01592 ATGAGCTTGATCATTGACATAACATTTTTATATATTATTTTGTTCTTTGTTTCATTGAACATAGTTTTGTGTATTGAAATTGAAATCAATGATTTTGATCCACAAGAAAGAGATGCTTTGTTAGTCATAAGAGATTCTTTAAATTCTTCTTCTATAAATTTGCATGGAAATTGGACAGGACCACCTTGTATAAACAACCTTAGTAGATGGTTTGGAATCACTTGTTCAAATTGGCATGTTGTTCATATTACAATTCAAGGTGTTAATCTTAGTGGCTATTTACCTTCAACATTTCAAAATATAACTTTCTTGAGGCAAATTGATTTTAGAAATAATGCACTTTTTGGAACATTGCCTAATCTAACAGGTTTGGTTTTCTTGGAAGAAGTGAAGCTTTCAGTTAATCATTTTTCAGGTTCAATTCCTTTGGAATATGTTGAATTGTTAAGTCTTAAAGTTTTGGAGTTACAAGAGAATTATTTAGATGGTGAAATCCCACCTTTTGATCAACCTTCATTGATAAGTTTCAATGTGTCATATAATCATTTGGTAGGGAAAATTCCTGAAACTTCTTTGCTTCAAAGGTTTCTAAAAAGTTCTTTTGATGATAATTCTGATCTTTGTGGATTTCCATTGGATAAGTCATGTTCTGTTGAACCTCCTGCACAACCTCCTTTTGCTATTCCACCTAGTCCTTCAATGGAAGAAAATAAGAAGAGACTTCAAGTTTGGATTATTGCTTTGATTTCTATTGTTGCAGCTGTTTTGTTTCTTTTTCTGGTGATTATTGCTTTCTTGTTTTGTAAAAGACAAGCTAAAGGAAATGAAACAAGAAGAAATGATTCAGCAAGGTATGTTTTTGGAACATGGGCAAAGAAGATGGTATATAATGCAGAAAACAGTGAAGATTCTGAAAAATTAGGCCAATTAGAATTTTGCAACAAGAAATTTCAAGTTTTTGATATGGATGATTTATTAAGGGCATCAGCAGAAGTTCTAGGAAGAGGAGATTTTGGTGTTACATATAAAGCAACACTTGAAACAGGTAATACTGTTGCAGTAAAGAGACTTAGCTACATAAATGAACTGAACAAGAGGGAATTTATTCAACAAATGCAATTGCTAGGAGAACTAAAGCATGAAAATTTGGTAGAAATTATCTCCTTTTATCATTCTGAAGATCAAAAGCTTGTCATATATGAACTTGTTTCTGATGGCACTTTGTTTGAACTCCTTCATGAGGGTAGAGGAATTGGAAGAATACCTCTTGATTGGAGTACAAGACTTGCAATTATCAAAGACATAGCAAAAGGTCTTGATTTCCTTCATCAATATTTGCCATCTCACAAAGTTCCTCATGCAAACCTCAAATCATCAAATGTCTTAATCCATCAAGACAACCAAGGTTACCATTCAAAGCTTATAGACTATGGTTTCTTACCTTTACTCTCATCATCCAAAAAAAATGAAGAAAAGTTAGCAATAAGCAAGTCACCAGAATTTGTTAAAGGGAAAAAGTTGACACACAAAACTGATGTATATTGTTTTGGTATCATTATGCTAGAGATTATAACTGGTAAAATTCCTGGTCATATCTTAGGTAATGAAGTTGAAGAAATAAGAACTAATGATCTTTCAGATTGGGTTAGAACTGTTGTGAATAATGATTGGTCTACTGATATATTGGATTTGGAAATCTTAGCAGAAAGAGAAGGGCATGATGCAATGTTGAATCTAACTGAGATAGCTCTTGAGTGTACTGATATGATACCTGATAATAGGCCTAAAATGAGTGTGGTGTTGAGGAAAATTGAAGAGATAGAGCAAATGATAAAAGAGAATGAATGA 1848 0.3247 MSLIIDITFLYIILFFVSLNIVLCIEIEINDFDPQERDALLVIRDSLNSSSINLHGNWTGPPCINNLSRWFGITCSNWHVVHITIQGVNLSGYLPSTFQNITFLRQIDFRNNALFGTLPNLTGLVFLEEVKLSVNHFSGSIPLEYVELLSLKVLELQENYLDGEIPPFDQPSLISFNVSYNHLVGKIPETSLLQRFLKSSFDDNSDLCGFPLDKSCSVEPPAQPPFAIPPSPSMEENKKRLQVWIIALISIVAAVLFLFLVIIAFLFCKRQAKGNETRRNDSARYVFGTWAKKMVYNAENSEDSEKLGQLEFCNKKFQVFDMDDLLRASAEVLGRGDFGVTYKATLETGNTVAVKRLSYINELNKREFIQQMQLLGELKHENLVEIISFYHSEDQKLVIYELVSDGTLFELLHEGRGIGRIPLDWSTRLAIIKDIAKGLDFLHQYLPSHKVPHANLKSSNVLIHQDNQGYHSKLIDYGFLPLLSSSKKNEEKLAISKSPEFVKGKKLTHKTDVYCFGIIMLEIITGKIPGHILGNEVEEIRTNDLSDWVRTVVNNDWSTDILDLEILAEREGHDAMLNLTEIALECTDMIPDNRPKMSVVLRKIEEIEQMIKENE 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01592 615 Coils Coil 597 615 - -
Trre12g01592 615 FunFam Leucine-rich repeat receptor-like protein kinase 126 218 - -
Trre12g01592 615 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Trre12g01592 615 Gene3D Transferase(Phosphotransferase) domain 1 403 615 - -
Trre12g01592 615 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Trre12g01592 615 Pfam Leucine rich repeat N-terminal domain 34 76 IPR013210 -
Trre12g01592 615 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 609 IPR046959 -
Trre12g01592 615 Pfam Protein kinase domain 330 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01592 615 SUPERFAMILY L domain-like 33 197 - -
Trre12g01592 615 SUPERFAMILY Protein kinase-like (PK-like) 331 604 IPR011009 -
Trre12g01592 615 Gene3D Ribonuclease Inhibitor 33 218 IPR032675 -
Trre12g01592 615 ProSiteProfiles Protein kinase domain profile. 327 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01592 Trre-Chr12 15694565 15697827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01592 36 608 Receptor kinase-like Gene Family AT1G48480 35.771 4.48e-106 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre12g01592 Pkinase 1.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01592 - - gmx:102668068 874.389