Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01591 ATGACTCTAAAACTCATGTCTTCTGAAATTTTATCTAACATCATGAGCTTGATCATTGACATAACATTTTTATATATTATTTTGTTCTTTGTTTCATTGAACATAGTTTTGTGTATTGAAATTGAAATCAATGATTTTGATCCACAAGAAAGAGATGCTTTGTTAGTCATAAGAGATTCTTTAAATTCTTCTTCTATAAATTTGCATGGAAATTGGACAGGACCACCTTGTATAAACAACCTTAGTAGATGGTTTGGAATCACTTGTTCAAATTGGCATGTTGTTCATATTACAATTCAAGGTGTTAATCTTAGTGGCTATTTACCTTCAACATTTCAAAATATAACTTTCTTGAGGCAAATTGATTTTAGAAATAATGCACTTTTTGGAACATTGCCTAATCTAACAGGTTTGGTTTTCTTGGAAGAAGTGAAGCTTTCAGTTAATCATTTTTCAGGTTCAATTCCTTTGGAATATGTTGAATTGTTAAGTCTTAAAGTTTTGGAGTTACAAGAGAATTATTTAGATGGTGAAATCCCACCTTTTGATCAACCTTCATTGATAAGTTTCAATGTGTCATATAATCATTTGGTAGGGAAAATTCCTGAAACTTCTTTGCTTCAAAGGTTTCTAAAAAGTTCTTTTGATGATAATTCTGATCTTTGTGGATTTCCATTGGATAAGTCATGTTCTGTTGAACCTCCTGCACAACCTCCTTTTGCTATTCCACCTAGTCCTTCAATGGAAGAAAATAAGAAGAGACTTCAAGTTTGGATTATTGCTTTGATTTCTATTGTTGCAGCTGTTTTGTTTCTTTTTCTGGTGATTATTGCTTTCTTGTTTTGTAAAAGACAAGCTAAAGGAAATGAAACAAGAAGAAATGATTCAGCAAGGTATGTTTTTGGAACATGGGCAAAGAAGATGGTATATAATGCAGAAAACAGTGAAGATTCTGAAAAATTAGGCCAATTAGAATTTTGCAACAAGAAATTTCAAGTTTTTGATATGGATGATTTATTAAGGGCATCAGCAGAAGTTCTAGGAAGAGGAGATTTTGGTGTTACATATAAAGCAACACTTGAAACAGGTAATACTGTTGCAGTAAAGAGACTTAGCTACATAAATGAACTGAACAAGAGGGAATTTATTCAACAAATGCAATTGCTAGGAGAACTAAAGCATGAAAATTTGGTAGAAATTATCTCCTTTTATCATTCTGAAGATCAAAAGCTTGTCATATATGAACTTGTTTCTGATGGCACTTTGTTTGAACTCCTTCATGAGGGTAGAGGAATTGGAAGAATACCTCTTGATTGGAGTACAAGACTTGCAATTATCAAAGACATAGCAAAAGGTCTTGATTTCCTTCATCAATATTTGCCATCTCACAAAGTTCCTCATGCAAACCTCAAATCATCAAATGTCTTAATCCATCAAGACAACCAAGGTTACCATTCAAAGCTTATAGACTATGGTTTCTTACCTTTACTCTCATCATCCAAAAAAAATGAAGAAAAGTTAGCAATAAGCAAGTCACCAGAATTTGTTAAAGGGAAAAAGTTGACACACAAAACTGATGTATATTGTTTTGGTATCATTATGCTAGAGATTATAACTGGTAAAATTCCTGGTCATATCTTAGGTAATGAAGTTGAAGAAATAAGAACTAATGATCTTTCAGATTGGGTTAGAACTGTTGTGAATAATGATTGGTCTACTGATATATTGGATTTGGAAATCTTAGCAGAAAGAGAAGGGCATGATGCAATGTTGAATCTAACTGAGATAGCTCTTGAGTGTACTGATATGATACCTGATAATAGGCCTAAAATGAGTGTGGTGTTGAGGAAAATTGAAGAGATAGAGCAAATGATAAAAGAGAATGAATGA 1890 0.3238 MTLKLMSSEILSNIMSLIIDITFLYIILFFVSLNIVLCIEIEINDFDPQERDALLVIRDSLNSSSINLHGNWTGPPCINNLSRWFGITCSNWHVVHITIQGVNLSGYLPSTFQNITFLRQIDFRNNALFGTLPNLTGLVFLEEVKLSVNHFSGSIPLEYVELLSLKVLELQENYLDGEIPPFDQPSLISFNVSYNHLVGKIPETSLLQRFLKSSFDDNSDLCGFPLDKSCSVEPPAQPPFAIPPSPSMEENKKRLQVWIIALISIVAAVLFLFLVIIAFLFCKRQAKGNETRRNDSARYVFGTWAKKMVYNAENSEDSEKLGQLEFCNKKFQVFDMDDLLRASAEVLGRGDFGVTYKATLETGNTVAVKRLSYINELNKREFIQQMQLLGELKHENLVEIISFYHSEDQKLVIYELVSDGTLFELLHEGRGIGRIPLDWSTRLAIIKDIAKGLDFLHQYLPSHKVPHANLKSSNVLIHQDNQGYHSKLIDYGFLPLLSSSKKNEEKLAISKSPEFVKGKKLTHKTDVYCFGIIMLEIITGKIPGHILGNEVEEIRTNDLSDWVRTVVNNDWSTDILDLEILAEREGHDAMLNLTEIALECTDMIPDNRPKMSVVLRKIEEIEQMIKENE 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01591 629 FunFam Leucine-rich repeat receptor-like protein kinase 140 232 - -
Trre12g01591 629 ProSiteProfiles Protein kinase domain profile. 341 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01591 629 Pfam Protein kinase domain 344 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01591 629 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Trre12g01591 629 SUPERFAMILY L domain-like 47 211 - -
Trre12g01591 629 Gene3D Transferase(Phosphotransferase) domain 1 417 629 - -
Trre12g01591 629 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 623 IPR046959 -
Trre12g01591 629 SUPERFAMILY Protein kinase-like (PK-like) 345 618 IPR011009 -
Trre12g01591 629 Gene3D Ribonuclease Inhibitor 47 232 IPR032675 -
Trre12g01591 629 Coils Coil 611 629 - -
Trre12g01591 629 Gene3D Phosphorylase Kinase; domain 1 306 416 - -
Trre12g01591 629 Pfam Leucine rich repeat N-terminal domain 48 90 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01591 Trre-Chr12 15694523 15697827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01591 50 622 Receptor kinase-like Gene Family AT1G48480 35.771 4.64e-106 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre12g01591 Pkinase 1.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01591 - - gmx:102668068 880.552