Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g01585 ATGACTACCTGCCCAATTTACGCTTCTTGTTCGGACGAAAGTGTTGTCGAATTAGACCTTGAGTCGTGTACCAAAATGTTTGATGTTAGTAGGAATTTCAGTGCAATGGATCTGAGGTCTAATCAACTGAGTTTGAGTTGGCCTATACCAAATTGTGCAATGTGTTCCGCGAAAGGCAAGAAATGTAGATGGAATAACAATGCCACAAAACATGGTGGCATTGAATGCTTTGTTTGCAACGTTGAACGGAAAACAATTCAAATTCCAAAATCTGTTATTTTCGCTACTGCCGGTTCAATTATATTGGGGTTAGTCACCATTGCACTTATTAAGATTTATCTACATTTTAGAGAAAAAGAAGAAGATCGAGTTAGAATCGATAAGTTTTTAGAGGATCATCGAGCACAAAAGCCCGCTAGATTTTCCTATGCTGATATTAAAAGAATCACGGGCGGATTTAAGGAAAAGTTGGGAGAAGGAGCTCATGGAACTGTATTTAAAGGAAAACTCTCTAGTGAGATTCTAGTGGCTGTGAAGATTCTCAACAATACACAAGGAGAAGGGAAAGAGTTCATCACTGAAGTCGAAATTATGGGCAAAATCCACCACATTAACGTGAGTTTCATATTTCCGCCCGATAACAAAGACCACTTCATGGGGTGGGAGAAGCTACAACAAATTGCTTTTGGCATAGCGAAAGGAATTGAGTATCTTCATGAGGGATGTAACCATCCAATCCTTCACTTTGACATCAACCCTCACAATGTTTTGCTAGATGACACTTTCACTCCGAAAATTTCAGATTTTGGTCTCGCCAAAATATGTTCCAAGAATCTTAGTATGGTGTCCATGACAGCTGCGAGGGGAACCTTAGGATATATGGCGCCTGAAGTTTTGTCCCGTAATTTTGGCAATGTTTCTCTTAAGTCTGATATTTACAGTTACGGAATGTTGTTGTTAGAACTAGTTGGAGGAAGAAAGAACGTTGACTCATCATCGTCTACTGAAAATTTCAATGTTTTATATCCAGAATGGATCCATAACTTATTGGAAGGAGACATACATATTCATATCGAAGATGAAGGCGATGTTAAAATCGCAAAGAAACTTGCAATTGTCGGACTTTGGTGCATTCAATGGCAACCAATGAACCGTCCTTCCATAAAAACCGTCGTACAAATGTTGGAAACAGAATGTTTCAACCAATTAAATTTTCCACCTAATCCTTTTCATTCCACCACTTCCATTACCACTAGTGAAGGATCTTTGGCAAGACAACCTTTCCAAATGGAAGTGATTCAGGAATAA 1308 0.3884 MTTCPIYASCSDESVVELDLESCTKMFDVSRNFSAMDLRSNQLSLSWPIPNCAMCSAKGKKCRWNNNATKHGGIECFVCNVERKTIQIPKSVIFATAGSIILGLVTIALIKIYLHFREKEEDRVRIDKFLEDHRAQKPARFSYADIKRITGGFKEKLGEGAHGTVFKGKLSSEILVAVKILNNTQGEGKEFITEVEIMGKIHHINVSFIFPPDNKDHFMGWEKLQQIAFGIAKGIEYLHEGCNHPILHFDINPHNVLLDDTFTPKISDFGLAKICSKNLSMVSMTAARGTLGYMAPEVLSRNFGNVSLKSDIYSYGMLLLELVGGRKNVDSSSSTENFNVLYPEWIHNLLEGDIHIHIEDEGDVKIAKKLAIVGLWCIQWQPMNRPSIKTVVQMLETECFNQLNFPPNPFHSTTSITTSEGSLARQPFQMEVIQE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g01585 435 ProSiteProfiles Protein kinase domain profile. 151 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01585 435 SUPERFAMILY Protein kinase-like (PK-like) 135 396 IPR011009 -
Trre12g01585 435 FunFam PR5-like receptor kinase 207 403 - -
Trre12g01585 435 Gene3D Transferase(Phosphotransferase) domain 1 209 404 - -
Trre12g01585 435 Gene3D Phosphorylase Kinase; domain 1 125 208 - -
Trre12g01585 435 Pfam Protein kinase domain 221 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g01585 435 Pfam Protein tyrosine and serine/threonine kinase 153 206 IPR001245 GO:0004672|GO:0006468
Trre12g01585 435 PANTHER RUST RESISTANCE KINASE LR10-RELATED 123 414 IPR045874 GO:0004672
Trre12g01585 435 ProSitePatterns Protein kinases ATP-binding region signature. 157 179 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g01585 Trre-Chr12 15670567 15671952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g01585 5 409 Receptor kinase-like Gene Family AT5G38260 35.550 8.32e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre12g01585 Pkinase 1.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g01585 - - gmx:100813645 644.81